Seo P P - OmicsDI

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Unknown (2090)
Transcriptomics (79)
Proteomics (23)
Metabolomics (10)
Genomics (6)

Organisms

Homo sapiens (43)
Mus musculus (29)
Oryza sativa (4)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (2)
Xanthomonas oryzae pv. oryzae PXO99A (2)
Triticum aestivum (2)
Gallus gallus (2)
Populus alba x Populus glandulosa (1)
Ogataea angusta (1)
Citrullus lanatus (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Staphylococcus aureus (1)
Canis lupus familiaris (1)
Corynebacterium glutamicum ATCC 13032 (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Drosophila melanogaster (1)
Oryctolagus cuniculus (1)
Solanum lycopersicum (1)
root (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (80)
pride (14)
MassIVE (7)
GNPS (5)
MetaboLights (5)
ENA (4)
jPOST (2)
geo (1)

Tissue

Cell culture (4)
Epithelial cell (3)
Blood serum (1)
Brain (1)
Kidney (1)
Monocyte (1)
Ovary (1)
Prostate adenocarcinoma cell (1)
Retina (1)
Retinal cell (1)
Root (1)
Somatic cell (1)
Stem cell (1)

Disease

Breast cancer (2)
Acute leukemia (1)
Chronic kidney disease (1)
Fragile X syndrome (1)
Myopia (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)
Thrombocytopenia (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (7)
Mass spectrometry (2)
NMR spectroscopy (2)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Gel-based experiment (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Agilent GC 7890A coupled with a single quadrupole MSD 5975C (5)
LTQ Velos ETD (5)
Linux server, HPC cluster (3)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (3)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (3)
Liquid nitrogen freezer, surgical instruments (3)
Illumina NovaSeq 6000 (3)
TripleTOF 5600 (3)
Not applicable in this study (2)
Q Exactive Plus (2)
LTQ Orbitrap Elite (1)
LTQ Velos (1)
Orbitrap Exploris 240 (1)
TripleTOF 6600 (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2013 (16)
2011 (15)
2014 (11)
2025 (9)
2015 (9)
2012 (9)
2010 (8)
2019 (6)
2016 (5)
2008 (4)
2023 (4)
2018 (4)
2026 (3)
2020 (3)
2022 (3)
2005 (2)
2021 (1)
2017 (1)

CHEBI ID

CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:15354 (3)
CHEBI:16449 (3)
CHEBI:16865 (3)
CHEBI:17754 (3)
CHEBI:18012 (3)
CHEBI:27266 (3)
CHEBI:27897 (3)
CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:78320 (3)
CHEBI:15366 (2)
CHEBI:15676 (2)
CHEBI:15940 (2)
CHEBI:16344 (2)
CHEBI:16737 (2)
CHEBI:16797 (2)
CHEBI:16811 (2)
CHEBI:16857 (2)
CHEBI:16919 (2)
CHEBI:17170 (2)
CHEBI:17191 (2)
CHEBI:17234 (2)
CHEBI:17596 (2)
CHEBI:17724 (2)
CHEBI:17750 (2)
CHEBI:17822 (2)
CHEBI:17992 (2)
CHEBI:18019 (2)

Metabolite Name

Alanine (2)
Choline (2)
Glucose (2)
Glycerol (2)
Glycine (2)
Glycine (2)
Inosine (2)
Isoleucine (2)
L-lysine (2)
Mannose (2)
Threonine (2)
Tryptophan (2)
Valine (2)
Xylose (2)
(2S)-2-isopropylmalic acid (1)
(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(R)-pantothenic acid (1)
(S)-dihydroorotic acid (1)
(S)-lactic acid (1)
(S)-malic acid (1)
1-Methylnicotinamide (1)
1-methyladenosine (1)
1-methylnicotinamide (1)
1H-indole (1)
2'-deoxyadenosine (1)
2'-deoxyadenosine 5'-monophosphate (1)
2'-deoxycytidine (1)
2'-deoxycytosine 5'-monophosphate (1)
2'-deoxyguanosine (1)
2'-deoxyguanosine 5'-monophosphate (1)

First Public Date

2024 (1)
2023 (1)
2022 (1)
2014 (1)

Study type

Transcription profiling by array (59)
RNA-seq of coding RNA (10)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (272)
2021 (260)
2023 (238)
2025 (221)
2024 (204)
2020 (201)
2019 (130)
2018 (126)
2017 (87)
2016 (83)
2015 (75)
2013 (50)
2014 (45)
2011 (41)
2026 (38)
2012 (32)
2010 (24)
2008 (16)
2009 (16)
2007 (4)
2005 (2)
2006 (2)
2001 (2)
2004 (1)

Lab affiliation

Assistant professor, School of Biological Sciences, Seoul National University (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Center for National Toxicology AI and Data, Korea Institute of Toxicology, Daejeon, 34114, Republic of Korea (1)
Centre for Discovery Brain Sciences, University of Edinburgh, UK; Simons Initiative for the Developing Brain, University of Edinburgh, UK (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea. (1)
Department of Molecular Medicine, CMRI, Exosome Convergence Research Center (ECRC), School of Medicine, Kyungpook National University, Daegu, Republic of Korea. (1)
Department of Neurology, Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310009, China (1)
Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Republic of Korea (1)
Department of Ophthalmology, Yongin Severance Hospital, Yonsei University College of Medicine, Yongin, Korea (1)
Institute for Basic Science and Seoul National University (1)
Korea Basic Science Institute (1)
Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. & Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
Proteomics core facility, Biomedicial Research Institute, Seoul National University Hospital (1)

Tags

xref:PubMed:19750006 (1)

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Sieve element occlusion (SEO) genes encode structural phloem proteins involved in wound sealing of the phloem.

Not available

S-EPMC3396537 | biostudies-literature

Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease

Gene expression profile in circulating leukocytes identifies patients with coronary artery disease Peter Sinnaeve, Mark Donahue, Peter Grass, Jacky Vonderscher, David Seo, Pascal Goldschmidt, Christopher Granger Department of Medicine, Duke University, Durham, NC, USA, Novartis Institute for Biome...

ORGANISM(S): Homo sapiens

2008-10-31 | E-GEOD-12288 | biostudies-arrayexpress

Crystallization and preliminary X-ray studies of ferredoxin-NAD(P)+ reductase from Chlorobium tepidum.

Not available

S-EPMC2374157 | biostudies-literature

Reduction of Osteoclastic Differentiation of Raw 264.7 Cells by EMF Exposure through TRPV4 and p-CREB Pathway.

Not available

S-EPMC9959640 | biostudies-literature

Response to drought and salt stress in leaves of poplar (Populus alba M-CM-^W P. glandulosa): Expression profiling by oligonucleotide microarray analysis

We performed that comprehensive identification of genes responsible for stress tolerance by analyzing the whole-genome expression profiles of poplar (Populus alba M-CM-^W P. glandulosa) leaves exposed to drought and salt stresses. Examination at the molecular level how this tree species responds to ...

ORGANISM(S): Populus alba x Populus glandulosa

2014-08-12 | E-GEOD-60311 | biostudies-arrayexpress

CT-derived brain volumes and plasma p-Tau217 for risk stratification of amyloid positivity in early-stage Alzheimer's disease.

Not available

S-EPMC12570835 | biostudies-literature

Unraveling the Catalytic Graphitization Mechanism of Ni-P Electroless Plated Cokes via In Situ Analytical Approaches.

Not available

S-EPMC10870289 | biostudies-literature

Vertical Orientation of Liquid Crystal on Polystyrene Substituted with n-alkylbenzoate-p-oxymethyl Pendant Group as a Liquid Crystal Precursor.

Not available

S-EPMC8271889 | biostudies-literature

Repurposing chloramphenicol acetyltransferase for a robust and efficient designer ester biosynthesis platform