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TranscriptomicsRNAseq analyses of pathogenic Burkholderia glumae under in vitro and in vivo conditions
We analyzed B. glumae transcriptome from infected rice tissue using an RNAseq technique. To identify unique expression of B. glumae genes within rice tissues, we compared in vivo transcriptome data of B. glumae to in vitro data. To accomplish this, we analyzed differentially expressed genes (DEGs) a...
ORGANISM(S): Burkholderia glumae BGR1 
2014-08-21 | E-GEOD-56958 | biostudies-arrayexpress
TranscriptomicsRNA-Seq analysis of quorum sensing-dependent genes in Burkholderia glumae BGR1
Burkholderia glumae causes rice grain rot and sheath rot by producing toxoflavin, whose expression is regulated by quorum sensing (QS). The QS systems of the bacterium rely on N-octanoyl homoserine lactone, synthesized by TofI and its cognate receptor TofR, to activate toxoflavin biosynthesis genes ...
ORGANISM(S): Burkholderia glumae 
2012-03-14 | E-GEOD-36485 | biostudies-arrayexpress
TranscriptomicsThe Submergence Tolerance Regulator Sub1A Mediates Stress-responsive Expression of AP2/ERF Transcription Factors
Rice NSF45K microarray experiment to dissect submergence tolerance response in submergence tolerant rice plant, M202(Sub1): We previously characterized the rice (Oryza sativa L.) Sub1 locus encoding three Ethylene Responsive Factor (ERF) transcriptional regulators. Genotypes carrying the Sub1A-1 a...
ORGANISM(S): Oryza sativa 
2010-03-08 | E-GEOD-17704 | biostudies-arrayexpress
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S-EPMC7007577 | biostudies-literature
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S-EPMC7995808 | biostudies-literature
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