Serrano I I - OmicsDI

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Unknown (2247)
Proteomics (79)
Transcriptomics (42)
Metabolomics (9)
Models (4)
Genomics (4)

Organisms

Homo sapiens (46)
Mus musculus (29)
Mycoplasmoides pneumoniae M129 (7)
Arabidopsis thaliana (6)
Bothrops cotiara (2)
Escherichia coli (2)
Mycoplasmoides pneumoniae (1)
Capsicum annuum (1)
Escherichia coli K-12 (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Acanthoscurria juruenicola (1)
Acanthoscurria (1)
Acanthoscurria gomesiana (1)
Bacteria (1)
Bothrops alcatraz (1)
Bothrops jararaca (1)
Mesomycoplasma hyorhinis SK76 (1)
Mycoplasmoides pneumoniae M129-B7 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Sus scrofa domesticus (1)
Synechocystis sp. (1)
Xenopus laevis (1)

Organisms

Capsicum annuum (1)

Repository

pride (73)
biostudies-arrayexpress (45)
MetaboLights (9)
BioModels (4)
MassIVE (4)
iProX (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (12)
Epithelial cell (10)
Liver (5)
Brain (3)
Embryonic stem cell (3)
Kidney cell (3)
Venom (3)
Bone marrow (2)
Embryonic fibroblast (2)
Hepatocyte (2)
Melanocyte (2)
Permanent cell line cell (2)
Skeletal muscle (2)
Stem cell (2)
Others (1)
1321-N1 cell (1)
B cell (1)
Blood cell (1)
Blood plasma (1)
Early embryonic cell (1)
Egg (1)
Egg cell (1)
Endocervix (1)
HCT-116 cell (1)
HuH-7 cell (1)
LS-180 cell (1)
MDA-MB-468 cell (1)
SK-MEL-28 cell (1)
T cell (1)
T-REx 293 cell (1)

Disease

Colon cancer (9)
Disease free (3)
Cardiovascular system disease (2)
Melanoma (2)
Osteosarcoma (2)
Acute leukemia (1)
Alzheimer's disease (1)
COVID-19 (1)
Chronic myeloid leukemia (1)
Cutaneous malignant melanoma 1 (1)
Glycogen storage disease V (1)
Human immunodeficiency virus infectious disease (1)
Obesity (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (73)
Shotgun proteomics (39)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-dependent acquisition (9)
Mass spectrometry (7)
Top-down proteomics (6)
Data-independent acquisition (5)
Mass spectrometry assay (2)
Gel-based experiment (2)
HDMSE (2)
MSE (2)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2500 (12)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2000 (3)
LTQ Orbitrap Velos (3)
Liquid Chromatography MS - positive - hilic (3)
Q Exactive (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina Genome Analyzer II (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
Orbitrap Eclipse (1)
Synapt G2 HDMS (1)
TimsTOF Ultra (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - - reverse phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (16)
2019 (15)
2021 (14)
2023 (13)
2022 (13)
2014 (10)
2016 (9)
2024 (8)
2026 (7)
2010 (6)
2017 (5)
2020 (5)
2018 (4)
2012 (4)
2013 (3)
2011 (2)
2015 (1)
2008 (1)
2007 (1)

UNIPROT ID/AC

A0A024R563 (1)
A0A024R8H9 (1)
A0A024RAN2 (1)
A0A024RC46 (1)
A0A087WUD1 (1)
A0A087WVZ5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087X1S3 (1)
A0A0A0MR66 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0B4J220 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AV96 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0MZ66 (1)
A1KXE4 (1)
A1L020 (1)
A1L0T0 (1)
A1L188 (1)
A1L3X0 (1)
A1X283 (1)
A1XBS5 (1)
A2BFH1 (1)
A2RRP1 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:6650 (6)
CHEBI:18012 (5)
CHEBI:15741 (4)
CHEBI:16811 (4)
CHEBI:17234 (4)
CHEBI:17992 (4)
CHEBI:30769 (4)
CHEBI:15428 (3)
CHEBI:15721 (3)
CHEBI:15846 (3)
CHEBI:16467 (3)
CHEBI:16610 (3)
CHEBI:16753 (3)
CHEBI:17126 (3)
CHEBI:17295 (3)
CHEBI:17797 (3)
CHEBI:17858 (3)
CHEBI:17895 (3)
CHEBI:18066 (3)
CHEBI:18186 (3)
CHEBI:18300 (3)
CHEBI:22653 (3)
CHEBI:22660 (3)
CHEBI:25017 (3)
CHEBI:26271 (3)
CHEBI:26986 (3)
CHEBI:27266 (3)
CHEBI:27570 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)

Metabolite Name

Asparagine (3)
Citrate (3)
Phenylalanine (3)
Tryptophan (3)
Tyrosine (3)
Valine (3)
ADP (2)
AMP (2)
ATP (2)
Aconitic acid (2)
Arginine (2)
Aspartic acid (2)
Decenedioic acid (2)
Fumarate (2)
GSSG (2)
Glucose (2)
Glutamine (2)
Histidine (2)
Hydroxyproline (2)
Isocitrate (2)
L-citrulline (2)
Malate (2)
Maleic acid (2)
Malic acid (2)
Methionine (2)
NAD (2)
NADH (2)
NADP (2)
Succinate (2)
Threonine (2)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (1)

Lab affiliation

Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (3)
Centre for Genomic Regulation (3)
CNIO (2)
Chromatin Biology Laboratory, Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Spain. Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Badalona, Spain. (2)
Winter Lab, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria (2)
- EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), Dr. Aiguader 88, 08003 Barcelona, Spain - Universitat Pompeu Fabra (UPF), Dr. Aiguader 88, 08003 Barcelona, Spain. - Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluis Companys 23, 08010 Barcelona, Spain (1)
1. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria 2. Center for Physiology and Pharmacology, Medical University of Vienna, Vienna, Austria (1)
Center for Molecular Medicine (CeMM), Vienna (1)
Centre de Regulacio Genomica de Barcelona (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Centro Nacional de investigaciones Cardiovasculares, CNIC (Madrid, Spain) (1)
Centron Nacional de Investigaciones Cardiovasculares, CNIC (Masdrid, Spain). (1)
Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Ctra de Can Ruti, Camí de les Escoles s/n, 08916, Badalona, Barcelona, Spain (1)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (1)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany (1)
Departamento de Bioquimica, Escola Paulista de Medicina, Universidade Federal de Sao Paulo, SP, Brazil (1)
Departamento de Bioquímica, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, 04023-901, Brazil; Laboratório Especial de Toxinologia Aplicada, Center of Toxins, Immune-Response and Cell Signaling, Instituto Butantan, São Paulo, 05503-900, Brazil (1)
Department of Biochemistry and Molecular Biology, Lipoproteins and Atherosclerosis Monash University, Australia Baker Heart and Diabetes Institute, Australia (1)
Department of Biochemistry, Federal University of São Paulo, Brazil. (1)
Department of Biochemistry, UNIFESP, Brazil. (1)
Department of Laboratory Medicine Department of Bioengineering and Therapeutic Sciences University of California, San Francisco (1)
Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada (1)
Functional Proteomics Laboratory - Department of Science and Technology, Federal University of Sao Paulo (UNIFESP), Sao Jose dos Campos, Sao Paulo, Brazil (1)
Functional Proteomics Laboratory Department of Science and Technology, Federal University of São Paulo (ICT-UNIFESP), São José dos Campos, SP, Brazil, Rua Talim, 330, 12231-280, Tel.: +55 11 3385-4135 ext. 9727. (1)
Head of Proteomics Unit, CNIO, Madrid (Spain) (1)
Helmholtz Zentrum München German Research Center for Environmental Health Institute of Diabetes Research Group Immune Tolerance in Diabetes Heidemannstraße 1 80939 München (1)
IGMM, CNRS, University of Montpellier, Montpellier, France Ligue Nationale Contre le Cancer team (1)
Institute for Research in Biomedicine (IRB), Barcelona Institute of Science and Technology (BIST), Barcelona 08028, Spain; Catalan Institution for Research and Advanced Studies (ICREA), Barcelona 08010, Spain (1)
Institute for Research in Biomedicine, IRB Barcelona, The Barcelona Institute of Science and Technology, BIST (1)

IsPrivate

False (4)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (8)
DNA-seq (3)
High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
Comparative genomic hybridization by array (1)
Ribo-seq (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2023 (290)
2025 (282)
2022 (280)
2021 (278)
2024 (239)
2020 (177)
2019 (128)
2018 (104)
2017 (93)
2016 (65)
2015 (63)
2014 (62)
2026 (42)
2012 (40)
2013 (36)
2011 (31)
2010 (25)
2009 (18)
2008 (11)
2006 (7)
2007 (6)
2004 (4)
2003 (4)
2005 (2)
1999 (2)
2002 (1)
2001 (1)
1998 (1)

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pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.

Not available

S-EPMC9936585 | biostudies-literature

Structure of i-Motif/Duplex Junctions at Neutral pH.

Not available

S-EPMC8397320 | biostudies-literature

Discovery of Arbuscular Mycorrhizae in Mosses of the Pottiaceae Family from the Chaco Serrano (Tucuman, Argentina).

Not available

S-EPMC11991092 | biostudies-literature

Dynamics of the chili pepper transcriptome during fruit development

Background The set of all mRNA molecules present in a cell constitute the transcriptome. The transcriptome varies depending on cell type as well as in response to internal and external stimuli during development. Chili pepper is an economically and culturally important horticultural crop as well as ...

ORGANISM(S): Capsicum annuum

2014-02-21 | E-GEOD-54123 | biostudies-arrayexpress

Site-specific incorporation of a fluorescent nucleobase analog enhances i-motif stability and allows monitoring of i-motif folding inside cells.

Not available

S-EPMC11014255 | biostudies-literature

Enhanced i-Motif Stability through Consecutive 2',2'-Difluorocytidine Incorporation.

Not available

S-EPMC12734662 | biostudies-literature

Proanthocyanidins Limit Adipose Accrual Induced by a Cafeteria Diet, Several Weeks after the End of the Treatment.

Not available

S-EPMC6723337 | biostudies-literature

Widely Targeted Metabolomics Reveals Metabolite Diversity in Jalapeno and Serrano Chile Peppers (Capsicum annuum L.).

Not available

S-EPMC9967468 | biostudies-literature

Induction of senescence renders cancer cells highly immunogenic

Cellular senescence is a stress response that activates innate immunity. However, the interplay between senescent cells and the adaptive immune system remains largely unexplored. Here, we show that senescent cells display enhanced MHC class I (MHC-I) antigen processing and presentation. Immunization...

ORGANISM(S): Mus musculus (Mouse)

2022-11-09 | PXD034059 | Pride

Covalent Inhibition of the Human 20S Proteasome with Homobelactosin C Inquired by QM/MM Studies.

Not available

S-EPMC9143130 | biostudies-literature

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2385 Results

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