Sg - OmicsDI

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Unknown (23897)
Proteomics (1205)
Transcriptomics (844)
Genomics (603)
Metabolomics (81)
Multiomics (35)
Models (30)
Other (29)
Genomic (1)
Clinical (1)
Methylation profiling (1)

Organisms

Homo sapiens (574)
Mus musculus (362)
Saccharomyces cerevisiae (85)
Arabidopsis thaliana (68)
Caenorhabditis elegans (31)
Drosophila melanogaster (26)
Rattus norvegicus (19)
Danio rerio (9)
Bos taurus (9)
Gallus gallus (9)
Sus scrofa (7)
Oryza sativa Japonica Group (6)
Escherichia coli (5)
Escherichia coli K-12 (4)
Candida albicans (4)
Solanum lycopersicum (4)
Platichthys flesus (3)
Porphyromonas gingivalis (3)
Streptomyces venezuelae (3)
Hordeum vulgare subsp. vulgare (3)
Pseudomonas protegens (2)
Nicotiana attenuata (2)
Mustela putorius furo (2)
Bartonella grahamii (2)
Lupinus angustifolius (2)
Chlamydomonas reinhardtii (2)
Schizosaccharomyces pombe (2)
Triticum aestivum (2)
Arabidopsis (1)
Nostoc sp. PCC 7120 = FACHB-418 (1)

Organisms

Homo sapiens (102)
Mus musculus (83)
Drosophila melanogaster (13)
Paenibacillus sp. JDR-2 (9)
soil metagenome (7)
Gallus gallus (6)
Rattus norvegicus (5)
Vitis vinifera (4)
Arabidopsis thaliana (4)
freshwater metagenome (3)
Buchnera aphidicola str. Sg (Schizaphis graminum) (2)
Bradyrhizobiaceae bacterium SG-6C (2)
Schizaphis graminum (2)
Halomicrococcus pelagicus (2)
Stevia rebaudiana (2)
Porcine epidemic diarrhea virus (2)
rock metagenome (2)
Aedes aegypti (2)
Camellia sinensis (2)
Bombyx mori (2)
bioreactor metagenome (2)
Hematodinium sp. SG-2012 (1)
Bacillus sp. SG-1 (1)
Novibacillus thermophilus (1)
Clinocera sp. SG-2021 (1)
Marilutibacter penaei (1)
Paraburkholderia sp. SG-MS1 (1)
Amblyomma aureolatum (1)
Blautia sp. SG-772 (1)
Clostridium tepidiprofundi DSM 19306 (1)

Repository

biostudies-arrayexpress (784)
MassIVE (616)
ENA (432)
pride (255)
geo (177)
jPOST (174)
PeptideAtlas (109)
MetaboLights (77)
EGA (66)
PanoramaPublic (40)
LINCS (23)
Cell Collective (20)
iProX (19)
EVA (9)
FAIRDOMHub (7)
BioModels (3)
GNPS (2)
MetabolomicsWorkbench (2)
NODE (2)
dbGaP (1)

Tissue

Others (56)
Cell culture (46)
Brain (19)
Epithelial cell (16)
Male Reproductive System (8)
Blood serum (8)
Female Reproductive System (7)
Lung (7)
Permanent cell line cell (7)
Digestive System (6)
Fibroblast (6)
Saliva (5)
Trophozoite (5)
Blood plasma (4)
Plant cell (4)
Spleen (4)
Liver (3)
Liver (3)
Spleen (3)
Binucleate cell (3)
Cell suspension culture (3)
Heart (3)
Hepatocyte (3)
Kidney (3)
Bacterial cells (2)
Hair (1)
Adrenal Gland (1)
Kidney (1)
Lung (1)
Pancreas (1)

Disease

Breast cancer (6)
Giardiasis (6)
Disease free (5)
Acute leukemia (3)
Prostate adenocarcinoma (3)
Brain glioblastoma multiforme (2)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Metastatic melanoma (2)
Obesity (2)
Severe acute respiratory syndrome (2)
Bladder carcinoma (1)
DNA repair deficiency (1)
"hyperglycaemic, obese and insulin resistant" (1)
Neoplasm Metastasis (1)
Alzheimer's disease (1)
Anthrax disease (1)
Benign skin melanocytic nevus (1)
Brain cancer (1)
CADASIL (1)
Cancer (1)
Cerebrovascular disease (1)
Cholangiocarcinoma (1)
Chronic kidney disease (1)
Chronic myeloid leukemia (1)
Colon cancer (1)
Coronavirus infectious disease (1)
Cutaneous anthrax (1)
Cystic fibrosis (1)
Cystinuria (1)

Technology Type

Mass Spectrometry (257)
Shotgun proteomics (135)
Mass spectrometry (42)
Bottom-up proteomics (36)
Mass spectrometry assay (34)
Affinity purification coupled with mass spectrometry proteomics (29)
Gel-based experiment (28)
Fluorescence intensity (23)
KINOMEscan (23)
Data-dependent acquisition (20)
Top-down proteomics (17)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Illumina 15K (8)
Data-independent acquisition (8)
SWATH MS (5)
HDMSE (4)
SRM/MRM (4)
MSE (3)
Mass spectrometry imaging (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
ESI (2)
Affinity proteomics (2)
DiaPASEF (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Infinium HumanMethylation450 BeadChips (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina NovaSeq 6000 (147)
Illumina NovaSeq X (47)
NextSeq 2000 (43)
NextSeq 500 (38)
Illumina HiSeq 2500 (21)
Illumina HiSeq 4000 (20)
NextSeq 550 (17)
Illumina HiSeq 2000 (16)
DNBSEQ-G400 (9)
HiSeq X Ten (9)
Illumina MiSeq (8)
N/A (6)
PromethION (5)
NA (5)
BGISEQ-500 (5)
None (4)
Illumina HiSeq X (4)
DNBSEQ-T7 (4)
Illumina HiSeq 3000 (4)
Element AVITI (3)
Not applicable (3)
Illumina HiSeq 1500 (3)
BD Rhapsody system (2)
Illumina Nova 6000 PE150 (2)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark) (2)
Chromium 10x (2)
Agilent 2100 Bioanalyzer (2)
NextSeq 1000 (2)
Illumina (2)
Illumina NOVAseq 6000 (1)

Publication Date

2025 (303)
2026 (269)
2024 (180)
2023 (160)
2022 (160)
2021 (133)
2014 (127)
2016 (126)
2020 (125)
2019 (104)
2015 (92)
2013 (86)
2018 (78)
2017 (71)
2011 (56)
2012 (46)
2010 (42)
2009 (20)
2008 (13)
2007 (9)
2005 (4)
2006 (3)

UNIPROT ID/AC

A5A3E0 (87)
B3KML9 (87)
B4E3A4 (87)
I3L4N8 (87)
M0QY37 (87)
O43707 (87)
P04264 (87)
P04350 (87)
P05787 (87)
P07900 (87)
P08238 (87)
P08729 (87)
P0DMV8 (87)
P11021 (87)
P11142 (87)
P12814 (87)
P12814-3 (87)
P13645 (87)
P17066 (87)
P34931 (87)
P35609 (87)
P35609-2 (87)
P54652 (87)
P55072 (87)
P60709 (87)
P62736 (87)
P63261 (87)
P63267 (87)
Q9LQT8 (1)
Q9MAA7 (1)

ENSEMBL ID

ENSG00000170477 (78)
ENSG00000229353 (41)
ENSG00000147251 (22)
ENSG00000247315 (11)
ENSG00000176092 (3)
ENSG00000204131 (3)

CHEBI ID

CHEBI:16704 (16)
CHEBI:16750 (15)
CHEBI:17154 (15)
CHEBI:17568 (15)
CHEBI:17596 (15)
CHEBI:15428 (14)
CHEBI:17368 (14)
CHEBI:30769 (14)
CHEBI:22660 (13)
CHEBI:24898 (13)
CHEBI:6650 (13)
CHEBI:16737 (13)
CHEBI:27897 (13)
CHEBI:18186 (12)
CHEBI:16811 (12)
CHEBI:16708 (12)
CHEBI:17562 (12)
CHEBI:15741 (12)
CHEBI:28044 (12)
CHEBI:16856 (10)
CHEBI:46195 (6)
CHEBI:29605 (1)
CHEBI:32906 (1)
CHEBI:29590 (1)
CHEBI:30088 (1)
CHEBI:32902 (1)
CHEBI:32635 (1)
CHEBI:32636 (1)
CHEBI:32639 (1)
CHEBI:29132 (1)

Metabolite Name

Guanosine (12)
Citric acid (10)
Uridine (10)
Inosine (10)
Hypoxanthine (10)
Leucine (9)
Taurine (9)
Adenosine (9)
Phenylalanine (9)
Creatinine (9)
Arginine (8)
Uracil (8)
Asparagine (8)
Isoleucine (8)
Cytidine (8)
Sucrose (8)
Creatine (8)
Lysine (7)
Alanine (7)
Valine (7)
Glycine (7)
Valine (7)
Betaine (7)
Pyroglutamic acid (7)
L-Tryptophan (7)
Azelaic acid (7)
Uric acid (7)
Xanthine (7)
Tryptophan (7)
L-Tyrosine (7)

First Public Date

2026 (70)
2024 (66)
2025 (47)
2022 (41)
2023 (37)
2021 (37)
2020 (31)
2017 (24)
2019 (20)
2014 (18)
2016 (14)
2015 (12)
2013 (9)
2018 (6)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Study status

Not provided (1)

Lab affiliation

Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (4)
MOE Key Laboratory of Biosystems Homeostasis & Protection, State Conservation Centre for Gene Resources of Endangered Wildlife, College of Life Sciences, Zhejiang University, Hangzhou 310058, P. R. China (3)
Weizmann Institute of Science (3)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Dalian Institute of Chemical Physics, CAS (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America (2)
George Mason University, VA (2)
Goethe University Frankfurt, University Hospital, Clinic of Neurology, Experimental Neurology, Heinrich Hoffmann Str. 7, 60590 Frankfurt am Main, Germany (2)
Institute of Biochemistry II, Goethe University, Medical School, Frankfurt, Germany (2)
Oak Ridge National Lab (2)
Population Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, VIC, Australia (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (2)
School of Medicine, Sun Yat-sen University (2)
Shenzhen Key Laboratory of Plant Genetic Engineering and Molecular Design, Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China (2)
State Key Laboratory for Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China (2)
The Sir Peter MacCallum Department of Oncology, The University of Melbourne, Victoria, Australia (2)
Vancouver Prostate Centre, Vancouver, Canada (2)
1 Department of Convergence Medicine, Asan Institute for Life Sciences, Asan Medical Center, Seoul 05505, Republic of Korea 2 Department of Biomedical Sciences, University of Ulsan College of Medicine, Seoul 05505, Republic of Korea 3 Clinical Proteomics Core Laboratory, Convergence Medicine Research Center, Asan Medical Center, Seoul 05505, Republic of Korea 4 Bio-Medical Institute of Technology, Asan Medical Center, Seoul 05505, Republic of Korea (1)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. Department of Experimental Neurodegeneration, University Medical Center Goettingen, Germany 2. 1Base Pharmaceuticals, Boston, MA 02129, USA (1)
1Center for Cardiovascular Regeneration, Department of Cardiovascular Sciences, Houston Methodist Research Institute. Houston Methodist, 6550 Fannin Street, Texas 77030, USA. (1)
1Dept. of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205 2Dept. of Environmental and Occupational Health, Fay W. Boozman College of Public Health, University of Arkansas for Medical Sciences, Little Rock, AR 72205 (1)
1Disease Target Structure Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea (1)
1Institute of Sports Medicine Copenhagen, Department of Orthopedic Surgery, Copenhagen University Hospital – Bispebjerg and Frederiksberg; Copenhagen, Denmark 2Department of Clinical Medicine, University of Copenhagen; Denmark (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 3Biological and Biomedical Sciences Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. (1)
1Natural Sciences and Engineering, University of South Carolina Upstate, Spartanburg, SC 29303 (1)
ANSES, INRAE, Ecole Nationale Vétérinaire d’Alfort, UMR BIPAR, Laboratoire de Santé Animale, 94700 Maisons-Alfort, France (1)

Keyword

PT1 (1)
Polypectomy (1)
Colorectal neoplasm (1)

IsPrivate

False (3)

Submitter Keywords

Not Peer Reviewed (1)

Classification

bacteria (11)
viruses (3)
fungi (1)

Modification

57.021464 (3)
15.994915 (2)
Not available (2)
+3amu) (1)
-17.026549 (1)
0.984016 (1)
4x(15)N labeled L-arginine (1)
79.966331 (1)
N6-dimethyl-L-lysine (1)

Study type

RNA-seq of coding RNA (268)
Transcription profiling by array (208)
RNA-seq of coding RNA from single cells (64)
ChIP-seq (54)
RNA-seq of total RNA (39)
DNA-seq (14)
Methylation profiling by array (14)
ATAC-seq (13)
RNA-seq of non coding RNA (12)
Other (9)
Genotyping by high throughput sequencing (9)
Single nucleus RNA sequencing (8)
Methylation profiling by high throughput sequencing (8)
Comparative genomic hybridization by array (6)
CUT&RUN (6)
Unknown experiment type (5)
MicroRNA profiling by high throughput sequencing (5)
ChIP-chip by tiling array (4)
Hi-C (4)
Ribo-seq (4)
Transcription profiling by tiling array (3)
Spatial transcriptomics by high-throughput sequencing (3)
Human - Single-cell sequencing (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Genotyping by array (2)
RIP-seq (2)
ScATAC-seq (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)

Release Date

2022 (2629)
2021 (2372)
2025 (2299)
2023 (2263)
2020 (2014)
2024 (2001)
2019 (1553)
2018 (1414)
2017 (1293)
2016 (1258)
2015 (1090)
2014 (851)
2013 (658)
2012 (549)
2011 (476)
2026 (474)
2010 (400)
2009 (302)
2008 (251)
2007 (144)
2006 (104)
2005 (72)
2003 (47)
2004 (45)
2001 (32)
2000 (24)
2002 (22)
1999 (19)
1998 (15)
1997 (5)

Location

Italy (1)

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Tenacibaculum sp. SG-28

Tenacibaculum sp. SG-28 Genome sequencing and assembly

PRJNA355360 | ENA

Salinilacihabitans sp. SG-WS-28

Salinilacihabitans sp. SG-WS-28 Genome sequencing

PRJNA1491532 | ENA

Nuclear receptor, RORa plays a critical role in obesity-associated inflammation, hepatic steatosis, and insulin resistance

We demonstrated that RORa-deficient staggerer mice (RORasg/sg) fed with a high fat diet (HFD) showed reduced adiposity and hepatic triglyceride levels compared to wild type (WT) littermates and were resistant to the development of hepatic steatosis, adipose-associated inflammation, and insulin resis...

ORGANISM(S): Mus musculus

2011-04-30 | E-GEOD-23736 | biostudies-arrayexpress

Novibacillus thermophilus strain:SG-1

Novibacillus thermophilus strain:SG-1 Genome sequencing and assembly

PRJNA371390 | ENA

Buchnera aphidicola str. Sg (Schizaphis graminum)

Buchnera aphidicola str. Sg (Schizaphis graminum) Transcriptome or Gene expression

PRJNA82811 | ENA

Rubricoccus marinus strain:SG-29

Rubricoccus marinus strain:SG-29 Genome sequencing and assembly

PRJNA355607 | ENA

Aureicoccus marinus strain:SG-18