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biostudies-arrayexpress (81)
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pride (34)
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Cocaine addiction (1)
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N/A (6)
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CHEBI ID

CHEBI:15428 (4)
CHEBI:17368 (4)
CHEBI:17568 (4)
CHEBI:18012 (4)
CHEBI:15846 (3)
CHEBI:16027 (3)
CHEBI:15343 (1)
CHEBI:15361 (1)
CHEBI:15422 (1)
CHEBI:15978 (1)
CHEBI:16001 (1)
CHEBI:16084 (1)
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CHEBI:16236 (1)
CHEBI:16526 (1)
CHEBI:16551 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:17665 (1)
CHEBI:17754 (1)
CHEBI:17794 (1)
CHEBI:17835 (1)
CHEBI:18021 (1)
CHEBI:18367 (1)
CHEBI:28013 (1)
CHEBI:28087 (1)
CHEBI:28602 (1)
CHEBI:29052 (1)
CHEBI:30031 (1)
CHEBI:4167 (1)

Metabolite Name

Hypoxanthine (3)
Uracil (3)
2'-deoxyinosine (2)
5-Aminopentanoic acid (2)
Adenine (2)
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IsPrivate

False (1)

First Public Date

2022 (2)
2023 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (41)
RNA-seq of coding RNA from single cells (10)
RNA-seq of coding RNA (10)
Single nucleus RNA sequencing (4)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
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ScATAC-seq (1)
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Methylation profiling by high throughput sequencing (1)
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Release Date

2025 (149)
2024 (121)
2022 (121)
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2021 (105)
2020 (103)
2019 (68)
2016 (43)
2018 (37)
2017 (35)
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2001 (1)
1997 (1)

Lab affiliation

State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
State Key Laboratory of Reproductive Medicine. Department of Histology and Embryology, Nanjing Medical University, Nanjing, China. (2)
1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
Cell and Chemical Biology Leiden University Medical Center, LUMC The Netherlands (1)
Department of Medicine, Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA (1)
Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany (1)
Department of Pharmacology, Harbin Medical University, Heilongjiang 163319, China (1)
Department of Rheumatology and immunology, Second Xiangya Hospital of South Central University, No.139 Ren Min Department of Rheumatology and immunology, Second Xiangya Hospital of South Central University, No.139 Ren Min Middle Road, Chang Sha,China41001111111rtment of Rheumatology and immunology, Second Xiangya Hospital of South Central University, No.139 Ren Min Mid6969Chang Sha,China410011d, Chang Sha,China410011 (1)
Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China (1)
Dezhou University (1)
Erciyes University Genome and Stem Cell Center (GENKOK) (1)
Genome and Stem Cell Center, Erciyes University, Turkiye (1)
IMSB, ETH Zurich (1)
Immunology Unit, Department of Microbiology, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand (1)
Mass Spectrometry Technology Access Center at McDonnell Genome Institute (MTAC@MGI) at Washington University School of Medicine (1)
Nanjing Med Univ, State Key Lab Reprod Med, Dept Histol & Embryol, 140 Hanzhong Rd, Nanjing 210029, Jiangsu, Peoples R China. (1)
National Center for Protein Science, Beijing (1)
Novartis Institutes for Biomedical Research, 22 Windsor Street, Cambridge MA 02139, USA (1)
School of Life Sciences, The Chinese University of Hong Kong, Sha Tin, N.T., Hong Kong; State Key Laboratory of Agrobiotechnology, and School of Life Sciences, The Chinese University of Hong Kong, Shatin N.T., Hong Kong (1)
Shanghai Key Laboratory of Tuberculosis, Clinic and Research Center of Tuberculosis,Shanghai Pulmonary Hospital, Tongji University School of Medicine (1)
State Key Laboratory of Reproductive Medicine (1)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University (1)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (1)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing, China. (1)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing, Jiangsu 210029, China. (1)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166, People's Republic of China. (1)
State Key Laboratory of Reproductive Medicine. Department of Histology and Embryology, Nanjing Medical University, Nanjing, China (1)
Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China (1)
UCLA (1)

Tags

xref:PubMed:35154017 (1)

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DNA accessibility profile of three C. elegans tissues during development

We show there is minimal genome-wide chromatin rearrangements (as measured by DNA accessibility) during tissue differentiation in C. elegans transgenic expression of E. coli DAM (DNA Adenine Methyltransferase) from tissue-specific promoters followed by mapping of methylated sites using a procedure t...

ORGANISM(S): Caenorhabditis elegans

2011-04-16 | E-GEOD-23042 | biostudies-arrayexpress

Transcription profiling of hippocampus samples from the Rattus norvegicus Syracuse High Avoidance (SHA) and Syracuse Low Avoidance (SLA) strains

Comparisons of hippocampi of Syracuse High Avoidance (SHA) and Syracuse Low Avoidance (SLA) learning rats

ORGANISM(S): Rattus norvegicus

2007-10-12 | E-GEOD-932 | biostudies-arrayexpress

The mitochondrial orf117Sha gene desynchronizes pollen development and causes pollen abortion in the Arabidopsis Sha CMS

Whole genome sequences (illumina technology) of mTALEN-produced fertile revertants of Arabidopsis thaliana CMS cytoline 39CV

ORGANISM(S): Arabidopsis thaliana

2024-03-22 | E-MTAB-13393 | biostudies-arrayexpress

Knockdown of PHF8 in HeLa S3 cells

PHF8 is an H3K9me2 demethylase, interacts with H3K4me3 and RNA Polymerase II, is enriched at thousands of transcription start sites and can act as a transcriptional co-activator. In the following experiment we wanted to analyze the impact of PHF8-knockdown on transcript levels in HeLa cells. Three i...

ORGANISM(S): Homo sapiens

2010-05-07 | E-GEOD-20563 | biostudies-arrayexpress

Low chorionic villous succinate accumulation associates with recurrent spontaneous abortion risk

Dysregulated extravillous trophoblast invasion and proliferation are known to increase the risk of recurrent spontaneous abortion (RSA); however, the underlying mechanism remains unclear. Herein, in our retrospective observational case-control study we show that villous samples from RSA patients, co...

2021-10-06 | MTBLS2148 | MetaboLights

NPAS3-HEK293-standardcond-Illumina

NPAS3 or truncated NPAS3 overexpressed HEK293 cells or control HEK293 cells were collected at 24 hours after gene overexpression.Total RNA from alll samples was extracted.Biotinylated cRNA was prepared using the Illumina total Prep RNA application Kits.Hybridization, washing and scanning were perfor...

ORGANISM(S): Homo sapiens

2011-10-03 | E-TABM-1078 | biostudies-arrayexpress

Genome sequence data of the antagonistic soil-borne yeast Cyberlindnera sargentensis (SHA 17.2).

Not available

S-EPMC8762083 | biostudies-literature

Design, Synthesis and Characterization of [G10a]-Temporin SHa Dendrimers as Dual Inhibitors of Cancer and Pathogenic Microbes.

Not available

S-EPMC9221442 | biostudies-literature

Gua Sha, a press-stroke treatment of the skin, boosts the immune response to intradermal vaccination.

Not available

S-EPMC5028785 | biostudies-literature

Transcriptional regulation of neurodevelopmental and metabolic pathways by the psychiatric illness candidate gene NPAS3

The HEK293 cells were transiently transfected by pDEST40-SOX11 or control plasmid (pDEST40).Cells were collected at 24 hours post-transfection.Total RNA from alll samples was extracted.Biotinylated cRNA was prepared using the Illumina total Prep RNA application Kits.Hybridization, washing and scanni...

ORGANISM(S): Homo sapiens

2011-10-18 | E-TABM-1082 | biostudies-arrayexpress

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