Shah D S DS - OmicsDI

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Unknown (352)
Genomics (60)
Transcriptomics (47)
Metabolomics (3)
Proteomics (2)

Organisms

Homo sapiens (50)
Drosophila melanogaster (25)
Mus musculus (8)
Drosophila simulans (6)
Drosophila yakuba (5)
Drosophila pseudoobscura (4)
Paxillus involutus (3)
Paxillus involutus ATCC 200175 (1)
Vibrio parahaemolyticus (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (92)
EGA (15)
MetaboLights (3)
MassIVE (1)
pride (1)

Tissue

Fibroblast (1)
Heart (1)

Technology Type

Mass spectrometry (3)
Illumina Genome Analyzer II (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Liquid Chromatography MS - positive - reverse phase (2)
NextSeq 500 (1)
LTQ Orbitrap Velos Pro (1)
Direct infusion MS - positive (1)

Publication Date

2010 (38)
2011 (18)
2013 (10)
2014 (8)
2016 (4)
2008 (3)
2020 (2)
2012 (2)
2009 (2)
2007 (2)
2023 (2)
2022 (2)
2019 (1)
2015 (1)
2003 (1)
2024 (1)

CHEBI ID

CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)
CHEBI:15843 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

Study type

ChIP-seq (44)
Transcription profiling by array (23)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (5)
Unknown experiment type (3)
ChIP-chip by tiling array (2)
Cell line - High-throughput sequencing (2)
High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (58)
2021 (43)
2010 (39)
2024 (38)
2023 (38)
2025 (37)
2020 (35)
2011 (27)
2015 (22)
2013 (21)
2014 (15)
2018 (13)
2017 (13)
2016 (12)
2019 (8)
2012 (7)
2026 (7)
2008 (5)
2009 (3)
2007 (2)
2003 (1)

Lab affiliation

McGill University Department of Pharmacology and Therapeutics Montreal, QC (1)

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An Updated Trial Sequential Meta-analysis of Vitamin D Receptor Gene Polymorphism (Fok1, Bsm1, Taq1 and Apa1) and Risk to Tuberculosis.

Not available

S-EPMC10784437 | biostudies-literature

An Unbiased Lipid Phenotyping Approach To Study the Genetic Determinants of Lipids and Their Association with Coronary Heart Disease Risk Factors

Direct infusion high-resolution mass spectrometry (DIHRMS) is a novel, high-throughput approach to rapidly and accurately profile hundreds of lipids in human serum without prior chromatography, facilitating in-depth lipid phenotyping for large epidemiological studies to reveal the detailed associati...

2024-02-02 | MTBLS4461 | MetaboLights

Transcription profiling of human neural crest cells

The expression profiles of five human trunk level neural crest cell lines were determined on Affymetrix chips HG U133 Plus 2.0. Experiment Overall Design: Total RNA was extracted from a confluent 10 cm dish of hNCC (lines N1-N5) from five human embryos at 26-32 dpf (Carnegie stages 12 & 13).

ORGANISM(S): Homo sapiens

2009-09-13 | E-GEOD-14340 | biostudies-arrayexpress

Kinetics and thermodynamics investigations of efficient and eco-friendly removal of alizarin red S from water via acid-activated Dalbergia sissoo leaf powder and its magnetic iron oxide nanocomposite.

Not available

S-EPMC11462623 | biostudies-literature

GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes.

Not available

S-EPMC7403622 | biostudies-literature

RNA-Seq of monoclonal cell lines after CRISPR/Cas9-mediated editing of box C/D snoRNA genes (SNORDs)

In this study monoclonal cell lines carrying mutations in snoRNA genes (SNORD74, SNORD75, SNORD77, SNORD80) were obtained. Next, whole transcriptome analysis of obtained cell lines was performed on an Illumina NextSeq 500 platform. RNA-seq libraries was constructed on PolyA mRNA-enriched fraction. T...

ORGANISM(S): Homo sapiens

2019-10-14 | E-MTAB-8269 | biostudies-arrayexpress

Expression analysis from glass-bead cultures of Paxillus involutus (ATCC200175) after amendments of 3 different substrates

Abstract: Proteins contribute to a major part of the organic nitrogen in forest soils. This nitrogen is mobilized and becomes available to trees as a result of the depolymerizing activities of symbiotic ectomycorrhizal fungi. The mechanisms by which these fungi depolymerize proteins and assimilate t...

ORGANISM(S): Paxillus involutus

2013-09-01 | E-GEOD-47838 | biostudies-arrayexpress

Expression analysis from glass-bead cultures of Paxillus involutus (ATCC200175) after amendments of nitrogen (+/-NH4) to substrate followed by incubation for different periods of time

ORGANISM(S): Paxillus involutus

2013-09-01 | E-GEOD-47839 | biostudies-arrayexpress

Transcriptome Analysis of T3SS1 in Vibrio parahaemolyticus

Comparative transcriptional mRNA profiles were generated of bacterial pathogen Vibrio parahaemolyticus under conditions that induce activity of virulence factor type III secretion system 1 (T3SS1). Induction conditions included growth of the bacteria in Dulbecco's Modified Eagle Medium (DMEM), over...

ORGANISM(S): Vibrio parahaemolyticus

2014-01-21 | E-GEOD-51423 | biostudies-arrayexpress

Transcriptional analyses of the ectomycorrhizal (ECM) fungus Paxillus involutus during growth on various lignocellulose soil substrates

In this study, examinations were performed on how the ECM fungus Paxillus involutus degrade complex, plant and litter material by using elemental analyses, FTIR spectroscopy, pyrolysis-GC/MS, and synchronous fluorescence spectroscopy together with microarray analyses screening 12,214 gene models, de...

ORGANISM(S): Paxillus involutus

2012-02-01 | E-GEOD-34402 | biostudies-arrayexpress

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