Shao Peng P - OmicsDI

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Unknown (181)
Transcriptomics (12)
Genomics (9)
Proteomics (9)
Metabolomics (4)

Organisms

Homo sapiens (16)
Mus musculus (8)
Neisseria meningitidis (2)
Andropogon gerardi (2)
Bacteria (2)
Bartonella quintana JK 31 (2)
Canis lupus familiaris (2)
Cnidaria (2)
Ensifer adhaerens (2)
Halictus scabiosae (2)
Human alphaherpesvirus 1 strain 17 (2)
Human alphaherpesvirus 1 strain KOS (2)
Human betaherpesvirus 5 (2)
Human herpesvirus 2 strain 186 (2)
Human immunodeficiency virus 1 (2)
Mesocricetus auratus (2)
Miscanthus x giganteus (2)
Mus musculus (2)
Panicum virgatum (2)
Platyhelminthes (2)
Pseudomonas aeruginosa PA103 (2)
Rabies virus Nishigahara RCEH (2)
Rattus norvegicus (2)
Rattus rattus (2)
Rhodococcus jostii RHA1 (2)
Rhodopseudomonas palustris (2)
Sorghastrum nutans (2)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (2)
Gallus gallus (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)

Repository

biostudies-arrayexpress (13)
EGA (7)
iProX (7)
MetaboLights (4)
pride (2)
ENA (1)

Tissue

Brain (1)
Whole body (1)

Disease

Mixed disorder as reaction to stress (1)

Technology Type

Mass spectrometry (4)
Mass Spectrometry (2)
Shotgun proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - positive - reverse (1)
Liquid Chromatography MS - negative - reverse (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2021 (4)
2013 (3)
2016 (2)
2012 (2)
2011 (2)
2010 (2)
2023 (2)
2024 (2)
2014 (1)
2007 (1)
2022 (1)
2019 (1)
2020 (1)
2015 (1)

CHEBI ID

CHEBI:26271 (3)
CHEBI:16344 (3)
CHEBI:16811 (3)
CHEBI:17562 (3)
CHEBI:15891 (3)
CHEBI:21557 (3)
CHEBI:16704 (3)
CHEBI:16737 (3)
CHEBI:17368 (3)
CHEBI:15888 (2)
CHEBI:74767 (2)
CHEBI:16796 (2)
CHEBI:35465 (2)
CHEBI:45919 (2)
CHEBI:75913 (2)
CHEBI:1606 (2)
CHEBI:30813 (2)
CHEBI:12777 (2)
CHEBI:42504 (2)
CHEBI:70959 (2)
CHEBI:17626 (2)
CHEBI:28822 (2)
CHEBI:70989 (2)
CHEBI:16974 (2)
CHEBI:16556 (2)
CHEBI:17992 (2)
CHEBI:20794 (2)
CHEBI:48526 (2)
CHEBI:16192 (2)
CHEBI:7125 (2)

Metabolite Name

4-Aminohippuric acid (2)
Nicotinamide N-oxide (2)
Glutathione (2)
5-Aminopentanoate (2)
N4-Acetylcytidine (2)
Acetylcarnitine (2)
Taurine (2)
Taurocholic acid (2)
Deoxycholic acid (2)
Proline (2)
Deoxyguanosine (2)
Guanosine (2)
Uridine (2)
Creatinine (2)
Inosine (2)
Hypoxanthine (2)
Cycloartanols and derivatives (1)
Miscellaneous mixed metal/non-metals (1)
N-acylpiperidines (1)
Naphthofurans (1)
Fluorenes (1)
Oxasteroids and derivatives (1)
Galanthamine-type amaryllidaceae alkaloids (1)
Glycosphingolipids (1)
Aristolactams (1)
Oxirane carboxylic acids and derivatives (1)
Bilirubins (1)
Imidazoquinolines (1)
Pyrenes (1)
Phenylpyridines (1)

First Public Date

2014 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (6)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
Other (1)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2024 (25)
2025 (24)
2021 (24)
2022 (20)
2023 (19)
2016 (15)
2020 (15)
2019 (12)
2018 (9)
2017 (7)
2015 (4)
2013 (3)
2012 (3)
2011 (3)
2010 (3)
2008 (3)
2014 (2)
2007 (1)
2026 (1)

Lab affiliation

Institute of Neuroscience and the Collaborative Innovation Center for Brain Science, Chongqing Medical University, Chongqing, China (1)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, P. R. China (1)

Tags

xref:PubMed:19767843 (1)
pathogen (1)
pathogen:bacterium (1)

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High-throughput sequencing of small RNAs from chicken embryos

We applied Illumina sequencing to identify microRNAs (miRNAs) and piwi-interacting small RNAs (piRNAs) in the pre- and post-gastrula chicken embryos, and simultaneously obtain a comprehensive expression profile of miRNAs at diverse developmental stages. Discovery and characterization of small RNA sp...

ORGANISM(S): Gallus gallus

2011-12-15 | E-GEOD-28668 | biostudies-arrayexpress

Precipitation increase counteracts warming effects on plant and soil C:N:P stoichiometry in an alpine meadow.

Not available

S-EPMC9666903 | biostudies-literature

Gene expression data of Lsd1fl/fl and Lsd1fl/fl Mx1Cre Gr1dim Mac1 granulocytic progenitor cells.

We discovered that mice with hematopoietic-specific deletion of Lsd1 lacked Gr-1+ Mac1+ neutrophilic granulocytes whereas the numbers of Gr-1dim Mac1+ granulocytic progenitor cells was increased. To determine the genes altered by Lsd1-loss, Gr-1dim Mac1+ granulocytic progenitor cells from Lsd1fl/fl ...

ORGANISM(S): Mus musculus

2013-06-25 | E-GEOD-40282 | biostudies-arrayexpress

Urine metabolomics phenotyping and urinary biomarker exploratory in mild cognitive impairment and Alzheimer's disease.

INTRODUCTION Alzheimer's disease is a prevalent disease with a heavy global burden and is suggested to be a metabolic disease in the brain in recent years. The metabolome is considered to be the most promising phenotype which reflects changes in genetic, transcript, and protein ...

2024-01-11 | MTBLS8662 | MetaboLights

Gene expression data of Lsd1fl/fl and Lsd1fl/fl Mx1Cre CD150+ CD48- lin- c-Kit+ Sca-1+ LT-HSCs

We discovered that mice that lack Lsd1 in hematopoietic cells were exhibited increased frequencies of CD150+ CD48- lin- c-Kit+ Sca-1+ LT-HSCs, but completely lacked the lin- c-Kit+ Sca-1- myeloid progenitor compartment. To determine the genes altered by Lsd1-loss, CD150+ CD48- lin- c-Kit+ Sca-1+ LT-...

ORGANISM(S): Mus musculus

2013-06-25 | E-GEOD-40284 | biostudies-arrayexpress

CGH result of Neisseria meningitidis ST-7 isolates

Neisseria meningitidis is a major cause of bacterial meningitis and septicemia worldwide. Seven new serogroup C meningococci were isolated from two provinces of China in January, 2006. Their PorA VR types were P1.20, 9. Multilocus sequence typing results indicated that they all belonged to ST-7. It ...

ORGANISM(S): Neisseria meningitidis

2007-10-10 | E-GEOD-7331 | biostudies-arrayexpress

Soil properties rather than plant diversity mediate the response of soil bacterial community to N and P additions in an alpine meadow.

Not available

S-EPMC9668868 | biostudies-literature

Systematic review and meta-analysis of the diagnostic value of computed tomography angiography for severe internal carotid artery stenosis.

Not available

S-EPMC11325575 | biostudies-literature

Transcriptome analysis of resistant and susceptible mulberry responses to Meloidogyne enterolobii infection.

Not available

S-EPMC8285880 | biostudies-literature

A weaker donor shows higher oxidation state upon aggregation.