Shen F F - OmicsDI

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Unknown (9221)
Proteomics (180)
Transcriptomics (128)
Metabolomics (55)
Genomics (39)
Models (5)
Multiomics (3)

Organisms

Homo sapiens (162)
Mus musculus (88)
Rattus norvegicus (10)
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Escherichia coli (7)
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Organisms

Mus musculus (7)

Repository

biostudies-arrayexpress (151)
pride (122)
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Tissue

Cell culture (18)
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Disease

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Technology Type

Mass Spectrometry (122)
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Bottom-up proteomics (23)
Affinity purification coupled with mass spectrometry proteomics (16)
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Mass spectrometry assay (8)
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SWATH MS (3)
NMR spectroscopy (2)
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All-ion fragmentation (1)
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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (27)
Liquid Chromatography MS - negative - reverse phase (15)
Illumina NovaSeq 6000 (13)
Liquid Chromatography MS - negative - hilic (10)
Liquid Chromatography MS - positive - hilic (9)
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Liquid Chromatography MS - positive - reverse-phase (4)
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Q Exactive (3)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
TripleTOF 6600 (2)
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6540 Q-TOF LC/MS (Agilent) (2)
Gas Chromatography MS - positive (2)
Illumina HiSeq 2000 platform (1)
Zymo Research (1)
PAXgene tubes (1)
Qiagen (1)
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Illumina HiSeq 4000 (1)
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LTQ XL (1)
Bruker (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
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Liquid Chromatography MS - alternating - c18 (1)

Publication Date

2022 (41)
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2015 (27)
2012 (24)
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2014 (19)
2013 (18)
2016 (17)
2010 (14)
2011 (13)
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2017 (4)
2008 (3)
2009 (2)
2007 (2)
2005 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

A0A099NL08 (1)
A0A099NMA6 (1)
A0A099NPP5 (1)
A0A099NPP8 (1)
A0A099NPZ8 (1)
A0A099NQA6 (1)
A0A099NQE1 (1)
A0A099NQM0 (1)
A0A099NR06 (1)
A0A099NR43 (1)
A0A099NRA1 (1)
A0A099NRC1 (1)
A0A099NRF5 (1)
A0A099NRT8 (1)
A0A099NRZ8 (1)
A0A099NS02 (1)
A0A099NS16 (1)
A0A099NS33 (1)
A0A099NS69 (1)
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A0A099NSE7 (1)
A0A099NSI8 (1)
A0A099NSM0 (1)
A0A099NSP3 (1)
A0A099NSP8 (1)
A0A099NSQ5 (1)
A0A099NSS1 (1)
A0A099NSU0 (1)
A0A099NSU9 (1)
A0A099NSW1 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (14)
CHEBI:1 (3)
CHEBI:11561 (3)
CHEBI:11814 (3)
CHEBI:11851 (3)
CHEBI:12071 (3)
CHEBI:12427 (3)
CHEBI:128769 (3)
CHEBI:12936 (3)
CHEBI:12952 (3)
CHEBI:13534 (3)
CHEBI:14314 (3)
CHEBI:145989 (3)
CHEBI:14649 (3)
CHEBI:15343 (3)
CHEBI:15361 (3)
CHEBI:15377 (3)
CHEBI:15379 (3)
CHEBI:15414 (3)
CHEBI:15428 (3)
CHEBI:15440 (3)
CHEBI:15441 (3)
CHEBI:15527 (3)
CHEBI:15589 (3)
CHEBI:15603 (3)
CHEBI:15621 (3)
CHEBI:15676 (3)
CHEBI:15686 (3)
CHEBI:15698 (3)
CHEBI:15699 (3)

Metabolite Name

Creatine (10)
Hypoxanthine (10)
L-Arginine (10)
Uridine (10)
L-Tyrosine (9)
Taurine (9)
Adenine (8)
Adenosine (8)
Betaine (8)
Creatinine (8)
Guanosine (8)
Inosine (8)
L-Histidine (8)
L-Phenylalanine (8)
Riboflavin (8)
Cholic acid (7)
Choline (7)
Cytidine (7)
Glycerophosphocholine (7)
Guanine (7)
L-Palmitoylcarnitine (7)
L-Proline (7)
Nicotinamide (7)
Suberic acid (7)
Urocanic acid (7)
Citric acid (6)
Dodecanedioic acid (6)
Glutaric acid (6)
Glycocholic acid (6)
Kynurenic acid (6)

First Public Date

2014 (2)
2026 (1)
2025 (1)
2024 (1)
2023 (1)
2019 (1)
2017 (1)
2015 (1)

Modelling Approach

Constraint-based model (4)

Lab affiliation

Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (4)
Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
University at buffalo, SUNY (3)
Abbvie Bioresearch Center (2)
Clinical Reaseach center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC-XIANGYA, Changsha, Hunan, China (2)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (2)
Durbrain (2)
Huazhong Agricultural University (2)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
Jiangsu Academy of Agricultural Sciences (2)
SIMM (2)
Stowers Institute for Medical Research (2)
West China Second University Hospital, Sichuan University (2)
yangjinguang@caas.cn (2)
1、Capital Institute of Pediatrics,Chinese Academy of Medical Sciences & Peking Union Medical College 2、Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics (1)
Agriculture and Agri-Food Canada, Canada (1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre. (1)
BGI-Shenzhen (1)
Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 138648 Singapore, Singapore. Department of Pharmacy, National University of Singapore, 117543, Singapore, Singapore. (1)
CAS Key Laboratory of Genomics and Precision Medicine, Beijing Institute of Genomics, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing, China (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University School of Medicine (1)
Center for Biologics Evaluation and Research, U.S. Food and Drug Administration (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
China Jiliang University (1)
College of Life Sciences, Hunan Normal University, Changsha 410081, China (1)
College of Veterinary Medicine, China Agricultural University, Beijing 100193, China (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China (1)
College of Veterinary Medicine, Shaanxi Centre of Stem Cells Engineering & Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (4)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (59)
RNA-seq of coding RNA (25)
ChIP-seq (19)
Methylation profiling by array (8)
Comparative genomic hybridization by array (6)
Other (6)
Unknown experiment type (5)
ChIP-chip by tiling array (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Transcription profiling by tiling array (2)
ATAC-seq (2)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (1293)
2022 (1184)
2023 (1081)
2024 (1044)
2021 (960)
2020 (693)
2019 (504)
2018 (453)
2017 (378)
2016 (377)
2015 (324)
2014 (236)
2026 (195)
2013 (177)
2012 (161)
2011 (110)
2010 (68)
2009 (44)
2008 (34)
2006 (16)
2007 (14)
2005 (10)
2003 (5)
2004 (3)
2002 (3)
2001 (2)
2000 (2)

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Huamn colon cancer cell line SW480 proteome changes following Lappaol F treatment

Lappaol F, a natural lignin isolated from the seeds of Arctium lappa L., was previously shown to have an inhibitory effect on tumour cells and might be a promising drug candidate for cancer chemotherapy. In the present study, human colon cancer cell line SW480 was treated with Lappaol F, and quantit...

ORGANISM(S): Homo sapiens (Human)

2022-10-13 | PXD017872 | Pride

Structural basis for the adaptation and function of chlorophyll f in photosystem I.

Not available

S-EPMC6957486 | biostudies-literature

Dual targeting of the Akt/mTOR signaling pathway inhibits castration-resistant prostate cancer in a genetically engineered mouse model

Analyses of differential gene expression analyses from intact versus castrated Nkx3.1CE2/+ or Nkx3.1CE2/+; Ptenf/f mice Total RNA isolated form phenotypically wild-type (intact) Nkx3.1CE2/+ (n = 3), intact Nkx3.1CE2/+; Ptenf/f (n = 6), and castrated Nkx3.1CE2/+; Ptenf/f (n = 6) prostate. Please con...

ORGANISM(S): Mus musculus

2012-07-03 | E-GEOD-39054 | biostudies-arrayexpress

B-Raf activation cooperates with PTEN loss to drive c-Myc expression in advanced prostate cancer

Anaysis of the response to different therapeutic agents at the transcriptional level. The design of the experiment allows to determine how the comnination target therapy (Rapamycin + PD0325901) treatment shifted the transcriptome towards a less aggressive or even a wild type phenotype. It also allow...

ORGANISM(S): Mus musculus

2012-07-18 | E-GEOD-39190 | biostudies-arrayexpress

Local F-actin network links synapse formation and axon branching.

Not available

S-EPMC3954643 | biostudies-literature

Neoantimycin F, a Streptomyces-Derived Natural Product Induces Mitochondria-Related Apoptotic Death in Human Non-Small Cell Lung Cancer Cells.

Not available

S-EPMC6760012 | biostudies-literature

Teuvincenone F Suppresses LPS-Induced Inflammation and NLRP3 Inflammasome Activation by Attenuating NEMO Ubiquitination.

Not available

S-EPMC5572209 | biostudies-literature

Combined Injection of (18)F-Fluorodeoxyglucose and 3'-Deoxy-3'-[(18)F]fluorothymidine PET Achieves More Complete Identification of Viable Lung Cancer Cells in Mice and Patients than Individual Radiopharmaceutical: A Proof-of-Concept Study.