Shen J J - OmicsDI

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Unknown (24405)
Proteomics (478)
Transcriptomics (154)
Metabolomics (82)
Genomics (37)
Multiomics (3)
Models (2)
Other (1)

Organisms

Homo sapiens (147)
Mus musculus (85)
Arabidopsis thaliana (15)
Saccharomyces cerevisiae (6)
Rattus norvegicus (5)
Oryza sativa (4)
Drosophila melanogaster (3)
Enterococcus faecalis (3)
Camponotus floridanus (2)
Macaca mulatta (2)
Sus scrofa (2)
Clostridium butyricum (2)
Enterobacter asburiae (2)
Grapholita molesta (2)
Lactobacillus acidophilus (2)
Morganella morganii (2)
Sclerotinia sclerotiorum (1)
Harpegnathos saltator (1)
Capra hircus (1)
Bombyx mori (1)
Oryza sp. (1)
Lilium longiflorum (1)
Schizosaccharomyces pombe 972h- (1)
Drosophila simulans (1)
Panonychus citri (1)
Neisseria meningitidis (1)
Hordeum vulgare (1)
Glycine max (1)
Triticum aestivum (1)
Danio rerio (1)

Organisms

Mus musculus (2)
Theobroma cacao (1)

Repository

pride (330)
biostudies-arrayexpress (178)
iProX (114)
MetaboLights (79)
MassIVE (23)
EGA (10)
ENA (4)
GNPS (3)
jPOST (3)
PeptideAtlas (3)
PAXDB (2)
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FAIRDOMHub (1)
geo (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (59)
Liver (18)
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Epithelial cell (14)
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Disease

Breast cancer (9)
Disease free (7)
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Malaria (3)
Stomach carcinoma (3)
Brain cancer (2)
Cardiovascular system disease (2)
Lymphoma (2)
Malignant neoplasm of ovary (2)
Non-alcoholic steatohepatitis (2)
Prostate cancer (2)
Normotensive (1)
Not Available (1)
Alveolar soft part sarcoma (1)
Antenatal onset (1)
Brain small vessel disease (1)
Cholangiocarcinoma (1)
Chronic kidney disease (1)
Diabetes mellitus (1)
Diabetic retinopathy (1)
Echinococcosis (1)
Fungal infectious disease (1)
Hepatocellular carcinoma (1)
Human immunodeficiency virus infectious disease (1)
Hydronephrosis (1)
Inflammation (1)

Technology Type

Mass Spectrometry (330)
Shotgun proteomics (175)
Mass spectrometry (72)
Bottom-up proteomics (52)
Affinity purification coupled with mass spectrometry proteomics (33)
Data-dependent acquisition (29)
Gel-based experiment (19)
Data-independent acquisition (15)
SWATH MS (15)
Top-down proteomics (14)
Mass spectrometry assay (5)
SRM/MRM (5)
All-ion fragmentation (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
DiaPASEF (2)
Immunopeptidomics (2)
Proteogenomics (2)
Illumina OncoArray (1)
Affinity proteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (41)
Liquid Chromatography MS - negative - reverse phase (28)
Illumina NovaSeq 6000 (7)
Illumina HiSeq 2000 (6)
Q Exactive (6)
Orbitrap Fusion Lumos (5)
Q Exactive HF (3)
Orbitrap Fusion (3)
LTQ Orbitrap Elite (3)
NextSeq 500 (2)
TripleTOF 6600 (2)
LTQ Orbitrap Velos (2)
Illumina HiSeq 2000 platform (1)
Zymo Research (1)
PAXgene tubes (1)
Computer (1)
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Illumina Genome Analyzer II (1)
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Illumina HiSeq 3000 (1)
Orbitrap Exploris 480 (1)
Instrument (1)
Exactive Plus (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
Q Exactive Plus (1)
TSQ Quantiva (1)

Publication Date

2022 (97)
2023 (79)
2025 (75)
2024 (73)
2021 (59)
2026 (46)
2020 (41)
2019 (34)
2015 (30)
2012 (29)
2018 (28)
2016 (28)
2014 (26)
2011 (25)
2013 (22)
2010 (16)
2017 (13)
2008 (5)
2007 (5)
2005 (2)
2009 (1)
2006 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
1433E_HUMAN (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:30769 (25)
CHEBI:17154 (24)
CHEBI:16704 (24)
CHEBI:17895 (24)
CHEBI:17568 (23)
CHEBI:17295 (23)
CHEBI:16708 (22)
CHEBI:16335 (22)
CHEBI:17750 (22)
CHEBI:15756 (22)
CHEBI:17368 (22)
CHEBI:7916 (21)
CHEBI:17203 (21)
CHEBI:16467 (20)
CHEBI:55328 (20)
CHEBI:17351 (20)
CHEBI:17015 (19)
CHEBI:16015 (19)
CHEBI:16750 (18)
CHEBI:28044 (18)
CHEBI:16196 (18)
CHEBI:17509 (18)
CHEBI:18183 (18)
CHEBI:15971 (18)
CHEBI:16027 (18)
CHEBI:17596 (18)
CHEBI:16828 (18)
CHEBI:16040 (17)
CHEBI:17562 (17)
CHEBI:17748 (17)

Metabolite Name

Adenine (18)
Hypoxanthine (17)
Adenosine (15)
Uridine (15)
Creatinine (15)
L-Tyrosine (15)
L-Arginine (14)
Uracil (13)
Taurine (13)
Guanosine (13)
L-Phenylalanine (13)
L-Histidine (12)
Nicotinamide (12)
Riboflavin (12)
Cytidine (12)
Creatine (12)
Inosine (12)
Betaine (11)
L-Proline (11)
Cholic acid (11)
Citric acid (11)
Linoleic acid (11)
4-Pyridoxic acid (10)
Choline (10)
Urocanic acid (10)
L-Tryptophan (10)
Sucrose (10)
L-Carnitine (10)
N6,N6,N6-Trimethyl-L-lysine (9)
4-Hydroxycinnamic acid (9)

First Public Date

2025 (1)
2018 (1)
2015 (1)
2014 (1)

Modification

15.994915 (2)
-17.026549 (1)
10.008269 (1)
2x(15)N labeled L-lysine (1)
42.010565 (1)
45.029395 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
58.005479 (1)
6.020129 (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (69)
RNA-seq of coding RNA (44)
ChIP-seq (19)
Methylation profiling by array (7)
Unknown experiment type (5)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (4)
Methylation profiling by high throughput sequencing (4)
Other (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
Proteomic profiling by array (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (3612)
2022 (3162)
2023 (2855)
2024 (2838)
2021 (2596)
2020 (1865)
2019 (1325)
2018 (1179)
2017 (1037)
2016 (928)
2015 (725)
2014 (561)
2026 (493)
2013 (369)
2012 (313)
2011 (195)
2010 (155)
2009 (105)
2008 (99)
2007 (48)
2006 (43)
2005 (33)
2003 (14)
2002 (10)
2004 (8)
2000 (5)
1999 (5)
2001 (3)
1998 (1)
1997 (1)

Lab affiliation

Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Northwest University (7)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (4)
West China Second University Hospital, Sichuan University (4)
Department of Biology, University of Rochester, NY, USA (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (3)
Fudan University (3)
SIMM (3)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
University at buffalo, SUNY (3)
Abbvie Bioresearch Center (2)
Cancer Center and Research Institute of Intestinal Diseases, Shanghai Tenth People's Hospital, School of Medicine, Tongji University (2)
Clinical Reaseach center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC-XIANGYA, Changsha, Hunan, China (2)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (2)
Durbrain (2)
George Washington University (2)
Hubei University of Medicine, Taihe Hospital (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Jiangsu Academy of Agricultural Sciences (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
University of Science and Technology of China (2)
Zhejiang University (2)
the First Affiliated Hospital of Chongqing Medical University (2)

Tags

xref:PubMed:23747202 (1)
xref:PubMed:30457566 (1)
xref:PubMed:32055844 (1)
xref:PubMed:34412677 (1)
xref:PubMed:31903125 (1)
xref:PubMed:27189060 (1)
xref:PubMed:23365080 (1)

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Phosphoproteomics of Jatropha curcas seedling under chilling stress

As a promising energy plant for biodiesel, Jatropha curcas is a tropical and subtropical shrub. Chilling is a major abiotic stress affecting the growth and development of J. curcas. In this study, we adopt the phosphoproteomic analysis, physiological measurement, ultrastructure observation to illust...

ORGANISM(S): Jatropha curcas

2019-01-09 | PXD011438 | Pride