Shen Joseph J - OmicsDI

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Unknown (52)
Proteomics (4)
Metabolomics (4)
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Organisms

Mus musculus (1)
Caenorhabditis elegans (1)
Rhodotorula mucilaginosa (1)

Repository

MetaboLights (4)
MassIVE (2)
pride (2)
biostudies-arrayexpress (1)

Technology Type

Mass spectrometry (4)
Mass Spectrometry (2)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
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Agilent 7890 (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)

Publication Date

2022 (2)
2015 (1)
2020 (1)
2018 (1)
2016 (1)
2026 (1)
2021 (1)

CHEBI ID

CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:16000 (2)
CHEBI:16119 (2)
CHEBI:16449 (2)
CHEBI:16551 (2)
CHEBI:16634 (2)
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CHEBI:16958 (2)
CHEBI:17234 (2)
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CHEBI:27266 (2)
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CHEBI:28757 (2)
CHEBI:28824 (2)

Metabolite Name

(-)-dihydrocarveol (1)
1,2,4-benzenetriol (1)
1,2-didecanoylglycerol (1)
1,5-anhydroglucitol (1)
1-methylhydantoin (1)
1-monopalmitin (1)
2'-deoxyadenosine 5'-monophosphate (1)
2,2-dimethylsuccinic Acid (1)
2,3-dihydroxypyridine (1)
2,4-diaminobutyric acid (1)
2,6-diaminopimelic acid (1)
2-amino-1-phenylethanol (1)
2-aminophenol (1)
2-deoxyerythritol (1)
2-furoic Acid (1)
2-hydroxybiphenyl (1)
2-hydroxybutanoic acid (1)
2-hydroxypyridine (1)
2-hydroxyvaleric acid (1)
2-ketoadipate (1)
2-ketobutyric acid (1)
2-ketoisovaleric acid (1)
2-monopalmitin (1)
3,4-dihydroxybenzoic acid (1)
3,5-dihydroxyphenylglycine (1)
3,6-anhydro-D-galactose (1)
3-Phenyllactic acid (1)
3-aminoisobutyric acid (1)
3-cyanoalanine (1)
3-hydroxy-L-proline (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2024 (11)
2022 (9)
2021 (7)
2025 (4)
2023 (4)
2020 (3)
2017 (3)
2015 (2)
2018 (2)
2016 (2)
2011 (2)
2019 (1)
2014 (1)
2013 (1)
2010 (1)

Lab affiliation

Laboratoire de Chimie Bacterienne, UMR7283 CNRS-AMU, 31 Chemin Joseph Aiguier, 13009 Marseille, France (1)
Max Planck Institute for Biology of Ageing, Joseph Stelzmann Strasse 9b, 50931 Cologne, Germany Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, 50674 Cologne, Germany (1)

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An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

BACKGROUND: Lactation is extremely important for dairy cows; however, the understanding of the underlying metabolic mechanisms is very limited. This study was conducted to investigate the inherent metabolic patterns during lactation using the overall biofluid metabolomics and the...

2018-03-16 | MTBLS411 | MetaboLights

Factors influencing long-term care facility performance during the COVID-19 pandemic: a scoping review.

Not available

S-EPMC11304669 | biostudies-literature

Variability of release rate of flame retardants in wastewater treatment plants.

Not available

S-EPMC6245005 | biostudies-literature

Infrared light enhances deep-sea yeast growth through temperature insensitive wavelength-dependent mitochondrial metabolism

Deep-sea hydrothermal vents emit intense infrared (IR) radiation that profoundly shapes microbial ecology and promotes bacterial growth. To investigate the mechanisms underlying IR responsiveness, we isolated Rhodotorula mucilaginosa strain F-J1, a deep-sea yeast. We found that both elevated tempera...

ORGANISM(S): Rhodotorula mucilaginosa

2026-09-07 | PXD069040 | Pride

Circadian and light-driven regulation of rod dark adaptation

The sensation of light is initiated in photoreceptor cells by the photoisomerization of a chromophore molecule from 11-cis to all-trans retinal. Continuous visual perception requires recycling of the spent chromophore back to the 11-cis form through the visual cycle, a series of reactions in the ret...

ORGANISM(S): Mus musculus

2015-11-19 | E-GEOD-68470 | biostudies-arrayexpress

Elevated peripheral absolute monocyte count related to clinicopathological features and poor prognosis in solid tumors: Systematic review, meta-analysis, and meta-regression.

Not available

S-EPMC7940224 | biostudies-literature

Population impact and cost-effectiveness of artificial intelligence-based diabetic retinopathy screening in people living with diabetes in Australia: a cost effectiveness analysis.

Not available

S-EPMC10837545 | biostudies-literature

The NHR-8 nuclear receptor regulates cholesterol and bile acid homeostasis in C. elegans.

Not available

S-EPMC3909615 | biostudies-literature

Protein arginine methyltransferase 5 regulates SHH-subgroup medulloblastoma progression.