Shen Yang Y - OmicsDI

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Unknown (6462)
Proteomics (130)
Metabolomics (35)
Transcriptomics (30)
Multiomics (3)
Genomics (2)

Organisms

Homo sapiens (52)
Mus musculus (26)
Enterococcus faecalis (3)
Escherichia coli (3)
Oryza sativa (2)
Rattus norvegicus (2)
Clostridium butyricum (2)
Enterobacter asburiae (2)
Lactobacillus acidophilus (2)
Morganella morganii (2)
Pseudomonas aeruginosa (2)
Tardigrada (2)
Capra hircus (1)
Drosophila simulans (1)
Neisseria meningitidis (1)
Zea mays (1)
Glycine max (1)
Bacteroides fragilis (1)
Citrobacter freundii complex (1)
Drosophila melanogaster (1)
Enterococcus casseliflavus (1)
Escherichia coli ATCC 25922 (1)
Klebsiella aerogenes (1)
Klebsiella pneumoniae (1)
Mus sp. (1)
Mycolicibacterium smegmatis MC2 51 (1)
Oryctolagus cuniculus (1)
Saccharomyces cerevisiae (1)
Severe acute respiratory syndrome coronavirus 2 (1)
feces metagenome (1)

Repository

pride (60)
iProX (54)
MetaboLights (35)
biostudies-arrayexpress (30)
MassIVE (8)
jPOST (3)
PeptideAtlas (3)
EGA (2)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (11)
Testis (5)
Others (3)
Brain (3)
Epithelial cell (3)
Heart (3)
Leaf (3)
Liver (3)
Adrenal adenoma cell (2)
Cell line cell (2)
Cell suspension culture (2)
Early embryonic cell (2)
Embryo (2)
Kidney (2)
Oocyte (2)
Pollen (2)
Stem cell (2)
Stigma (2)
B cell (1)
Breast (1)
Breast cancer cell line (1)
Flower (1)
Glioblast (1)
HCT-116 cell (1)
Kidney cell (1)
Lung (1)
Lymph node (1)
Macrophage (1)
Pancreas (1)
Permanent cell line cell (1)

Disease

Disease free (4)
Breast cancer (2)
Brain glioblastoma multiforme (1)
Cervix carcinoma (1)
Cholangiocarcinoma (1)
Lung small cell carcinoma (1)
Lymphoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (39)
Mass spectrometry (32)
Bottom-up proteomics (11)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry assay (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Proteogenomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (21)
Liquid Chromatography MS - negative - reverse phase (15)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Orbitrap Fusion (4)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - positive (2)
LTQ Orbitrap Elite (2)
HiSeq X Ten (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Agilent 7890 (1)
Bruker (1)
Liquid Chromatography MS - (1)
Xevo QTof MS (Waters) (1)
Liquid Chromatography MS - negative (1)
QExactive (1)

Publication Date

2023 (27)
2025 (23)
2022 (19)
2019 (17)
2024 (16)
2021 (14)
2017 (10)
2012 (10)
2013 (8)
2018 (7)
2016 (5)
2014 (5)
2010 (3)
2020 (3)
2026 (2)
2015 (1)
2011 (1)
2006 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16704 (13)
CHEBI:17154 (12)
CHEBI:16040 (11)
CHEBI:17748 (11)
CHEBI:17821 (11)
CHEBI:16335 (11)
CHEBI:17568 (11)
CHEBI:55328 (11)
CHEBI:17351 (11)
CHEBI:30769 (11)
CHEBI:15676 (10)
CHEBI:16750 (10)
CHEBI:17509 (10)
CHEBI:17750 (10)
CHEBI:17203 (10)
CHEBI:16359 (10)
CHEBI:17368 (10)
CHEBI:17256 (9)
CHEBI:17015 (9)
CHEBI:16196 (9)
CHEBI:16235 (9)
CHEBI:7916 (9)
CHEBI:16467 (9)
CHEBI:16015 (9)
CHEBI:17895 (9)
CHEBI:15756 (9)
CHEBI:18344 (9)
CHEBI:27781 (8)
CHEBI:42504 (8)
CHEBI:16708 (8)

Metabolite Name

Adenosine (10)
Uridine (9)
Hypoxanthine (9)
Cholic acid (8)
Adenine (8)
Guanosine (8)
Riboflavin (7)
Cytidine (7)
Thymidine (7)
Stearoylcarnitine (6)
Uracil (6)
Betaine (6)
Myristoleic acid (6)
L-Proline (6)
Phytosphingosine (6)
L-Arginine (6)
Guanine (6)
Sucrose (6)
L-Carnitine (6)
L-Tyrosine (6)
Isonicotinic acid (5)
L-Alanine (5)
Benzoic acid (5)
Cholesterol (5)
L-Histidine (5)
Acetylcholine (5)
Nicotinamide (5)
Indole (5)
Choline (5)
L-Palmitoylcarnitine (5)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (7)
Transcription profiling by RT-PCR (6)
RNA-seq of non coding RNA (3)
Comparative genomic hybridization by array (2)
Other (2)
Unknown experiment type (1)
ChIP-chip by array (1)

Release Date

2025 (1045)
2023 (851)
2022 (847)
2024 (818)
2021 (721)
2020 (477)
2019 (339)
2018 (295)
2017 (234)
2016 (201)
2026 (153)
2015 (149)
2014 (114)
2013 (78)
2012 (66)
2011 (33)
2010 (20)
2009 (16)
2008 (11)
2006 (9)
2007 (8)
2004 (3)
2005 (1)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Jiangsu Academy of Agricultural Sciences (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
West China Second University Hospital, Sichuan University (2)
the First Affiliated Hospital of Chongqing Medical University (2)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
Agriculture and Agri-Food Canada, Canada (1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre. (1)
BGI-Shenzhen (1)
BGI-Shenzhen,China (1)
Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine (1)
Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University Schoole of Medicine (1)
City of Hope Beckman Research Institute (1)
College of Veterinary Medicine, China Agricultural University, Beijing 100193, China (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Department of Obstetrics/Gynecology, Joint Laboratory of Reproductive Medicine (SCU-CUHK), Key Laboratory of Obstetric, Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, West China Second University Hospital, Sichuan University, Chengdu 610041, China. (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Hu Bei province,enshi Acandemy of Agricutural sciences (1)
Institute of Pathological Physiology First Faculty of Medicine, Charles University (1)
Institute of Plant Biology and Biotechnology University of Muenster Schlossplatz 7 48149 Muenster Germany (1)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (1)
Key Laboratory for Metabolic Diseases in Chinese Medicine, Nanjing University of Chinese Medicine (1)

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UHPLC-MS-based metabolomics and chemoinformatics study reveals the neuroprotective effect and chemical characteristic in Parkinson's disease mice after oral administration of Wen-Shen-Yang-Gan decoction.

Not available

S-EPMC8386550 | biostudies-literature

The complete mitochondrial genome of the Rana sangzhiensis Shen and its phylogenetic analyses.

Not available

S-EPMC7872534 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

Molecular mechanism of Dang-Shen-Yu-Xing decoction against Mycoplasma bovis pneumonia based on network pharmacology, molecular docking, molecular dynamics simulations and experimental verification.

Not available

S-EPMC11458528 | biostudies-literature

Towards practical and robust DNA-based data archiving using the yin-yang codec system.

Not available

S-EPMC10766522 | biostudies-literature

Population genetic implications from sequence variation in four Y chromosome genes.

Not available

S-EPMC16549 | biostudies-literature

Plasma metabolome alteration in dairy cows with left displaced abomasum before and after surgical correction

Left displaced abomasum (LDA) leads to substantial changes in the metabolism of dairy cows. Surgical correction of LDA can rapidly improve the health of cows; however, changes in metabolism following surgery are rarely described. To investigate the changes of plasma metabolome in cows with LDA befor...

2022-08-17 | MTBLS4126 | MetaboLights

Network Pharmacology-Based Identification of the Mechanisms of Shen-Qi Compound Formula in Treating Diabetes Mellitus.

Not available

S-EPMC7292981 | biostudies-literature

Shen-Ling-Bai-Zhu-San for ulcerative colitis: Protocol for a systematic review and meta-analysis.

Not available

S-EPMC6160248 | biostudies-literature

Metrnl/Meteorin-like/IL-41 Alleviates Rheumatoid Arthritis Via PPARγ-Mediated Suppression of Inflammation, Angiogenesis, and Bone Destruction.

Not available

S-EPMC12832592 | biostudies-literature