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TranscriptomicsExpression data from Shewanella oneidensis MR-1 wild-type, Δcrp, and ΔcyaC strains
Anaerobic respiration in the metal reducer Shewanella oneidensis MR-1, unlike other bacteria, is regulated by the cAMP receptor protein, CRP. Three putative genes, cyaA, cyaB, and cyaC, predicted to encode class I, class IV, and class III adenylate cyclases respectively, have been identified in the ...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-06-19 | E-GEOD-15657 | biostudies-arrayexpress
Transcriptomicsdelta-arcS versus wild-type
The availability of oxygen is a major environmental factor for many microbes, in particular for bacteria, such as Shewanella species, which thrive in redox-stratified environments. One of the best studied systems involved in mediating the response to changes in environmental oxygen levels is the Arc...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-06-05 | E-GEOD-21044 | biostudies-arrayexpress
TranscriptomicsTranscript structures in Shewanella amazonensis SB2B
5' RNASeq of mRNA from Shewanella amazonensis SB2B grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium 5'-end mRNA profiles of mid-log phase bacterial cells growing in LB or lactate medium were generated by next-generation sequencing.
ORGANISM(S): Shewanella amazonensis SB2B 
2013-03-21 | E-GEOD-45317 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Shewanella oneidensis was grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms.
Shewanella oneidensis was grown in open circuit (control) and closed circuit (current collecting) to observe the difference in extracellular electron transfer (EET) mechanisms. mRNA was extracted, amplified and used on Combimatrix custom arrays to obtain an expression profile. Analysis was performed...
ORGANISM(S): Shewanella oneidensis 
2010-07-08 | E-MTAB-266 | biostudies-arrayexpress
TranscriptomicsExpression data from Shewanella oneidensis MR-1 in time series experiment
The sumitted data compares gene expression profile of Shewnaella oneidensis MR-1 on two different sets of media conditions (nutritionally rich LB medium and Lactate minimal medium) To explore the effect of various growth phases in Shewanella oneidensis MR-1, the genome-wide transcriptome profiles gr...
ORGANISM(S): Shewanella oneidensis MR-1 
2012-04-30 | E-GEOD-25821 | biostudies-arrayexpress
TranscriptomicsComparative transcriptome analysis of Shewanella MR-1 under oxic vs. suboxic conditions
To understand how cell physiological state affects mRNA translation, we used the bacterium Shewanella oneidensis MR-1 grown under steady state conditions at either 20% or 8.5% O2. Using a combination of quantitative proteomics and RNA-Seq, we generated high-confidence data on >1000 mRNA and protein ...
ORGANISM(S): Shewanella oneidensis MR-1 
2015-01-16 | E-GEOD-65062 | biostudies-arrayexpress
GenomicsShewanella putrefaciens isolate:JNE2 strain
Shewanella putrefaciens isolate:JNE2 strain Genome sequencing
PRJNA829244 | ENA
GenomicsShewanella polaris
Shewanella polaris genome sequencing
PRJNA1115953 | ENA
GenomicsShewanella
Shewanella Genome sequencing
PRJNA1064064 | ENA
GenomicsShewanella baltica
Whole genome sequence of Shewanella baltica 128
PRJNA438860 | ENA
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