Sort   by:  
 Page size 
TranscriptomicsExpression data from Shewanella oneidensis MR-1 wild-type, Δcrp, and ΔcyaC strains
Anaerobic respiration in the metal reducer Shewanella oneidensis MR-1, unlike other bacteria, is regulated by the cAMP receptor protein, CRP. Three putative genes, cyaA, cyaB, and cyaC, predicted to encode class I, class IV, and class III adenylate cyclases respectively, have been identified in the ...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-06-19 | E-GEOD-15657 | biostudies-arrayexpress
Transcriptomicsdelta-arcS versus wild-type
The availability of oxygen is a major environmental factor for many microbes, in particular for bacteria, such as Shewanella species, which thrive in redox-stratified environments. One of the best studied systems involved in mediating the response to changes in environmental oxygen levels is the Arc...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-06-05 | E-GEOD-21044 | biostudies-arrayexpress
ProteomicsQuantitative proteome of Shewanella oneidensis MR-1
We investigated the anode-specific responses of Shewanella oneidensis MR-1, an exoelectroactive ammaproteobacterium, using for the first time iTRAQ and 2D-LC MS/MS driven membrane proteomics to compare protein abundances in S. oneidensis when generating power in MFCs, and growing in a continuous cul...
ORGANISM(S): Shewanella oneidensis (strain MR-1) 
2016-12-08 | PXD004090 | Pride
Shewanella oneidensis mr-1 Membrane proteins Itraq Microbial fuel cell (mfc) biofilms 
TranscriptomicsTranscript structures in Shewanella oneidensis MR-1
5' RNASeq of mRNA from S. oneidensis MR-1 grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium 5'-end mRNA profiles of mid-log phase bacterial cells growing in LB or lactate medium were generated by next-generation sequencing.
ORGANISM(S): Shewanella oneidensis MR-1 
2013-03-21 | E-GEOD-45313 | biostudies-arrayexpress
ProteomicsBiofilm-associated extracellular material in Shewanella oneidensis MR-1
Biofilms formed by Shewanella oneidensis MR-1 are crucial for metal reduction, underpinning bioremediation and bioenergy applications, yet detailed structural insights into biofilm components remain limited. Here we show that MR-1 biofilms contain abundant filamentous networks, membrane vesicles, an...
ORGANISM(S): Shewanella oneidensis (strain MR-1) 
2026-09-07 | PXD075695 | Pride
Biofilm Shewanella oneidensis 
TranscriptomicsComparative transcriptome analysis of Shewanella MR-1 under oxic vs. suboxic conditions
To understand how cell physiological state affects mRNA translation, we used the bacterium Shewanella oneidensis MR-1 grown under steady state conditions at either 20% or 8.5% O2. Using a combination of quantitative proteomics and RNA-Seq, we generated high-confidence data on >1000 mRNA and protein ...
ORGANISM(S): Shewanella oneidensis MR-1 
2015-01-16 | E-GEOD-65062 | biostudies-arrayexpress
TranscriptomicsdRNA-seq of Shewanella oneidensis MR-1
We combined high-resolution tiling microarrays and 5'-end RNA sequencing to obtain a genome-wide map of transcription start sites (TSSs) for Shewanella oneidensis MR-1. To test the reliability of these TSSs, we compared our result to those from differential RNA sequencing (dRNA-seq), which discrimin...
ORGANISM(S): Shewanella oneidensis MR-1 
2014-06-12 | E-GEOD-58292 | biostudies-arrayexpress
TranscriptomicsExpression data from Shewanella oneidensis MR-1 in time series experiment
The sumitted data compares gene expression profile of Shewnaella oneidensis MR-1 on two different sets of media conditions (nutritionally rich LB medium and Lactate minimal medium) To explore the effect of various growth phases in Shewanella oneidensis MR-1, the genome-wide transcriptome profiles gr...
ORGANISM(S): Shewanella oneidensis MR-1 
2012-04-30 | E-GEOD-25821 | biostudies-arrayexpress
TranscriptomicsMR-1 gene expression profiles of iron response
Time-series transcriptional profiles of Shewanella oneidensis type strain MR-1 under iron depletion and repletion conditions. Iron homeostasis of Shewanella oneidensis, a gamma-proteobacterium possessing high iron content, is regulated by a global transcription factor Fur. However, knowledge is inco...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-01-12 | E-GEOD-15334 | biostudies-arrayexpress
TranscriptomicsMR-1 nitrate sample to fumarate sample
One of the most striking observations in the S. oneidensis genome regarding nitrate respiration is that napC is missing and nrfBCD is degenerated. To gain insights into candidate genes encoding the protein(s) in place of NapC and NrfBCD function, i.e., delivering electrons to NapA and NrfA, transcri...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-05-19 | E-GEOD-11198 | biostudies-arrayexpress
Sort   by:  
 Page size