Shi W W - OmicsDI

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Unknown (17055)
Transcriptomics (538)
Proteomics (433)
Genomics (88)
Metabolomics (63)
Genomic (3)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (388)
Mus musculus (198)
Arabidopsis thaliana (22)
Rattus norvegicus (19)
Caenorhabditis elegans (9)
Drosophila melanogaster (9)
Danio rerio (9)
Saccharomyces cerevisiae (8)
Ciona intestinalis (4)
Zika virus (4)
Macaca fascicularis (4)
Sus scrofa (4)
Oryza sativa (4)
Staphylococcus aureus (4)
Theobroma cacao (3)
Zea mays (3)
Bos taurus (3)
Macaca mulatta (2)
Pan troglodytes (2)
Clostridium beijerinckii NCIMB 8052 (2)
Streptomyces coelicolor (2)
Hordeum vulgare subsp. vulgare (2)
Ovis aries (2)
Sinorhizobium meliloti (2)
Ctenopharyngodon idella (2)
Hoolock leuconedys (1)
Sinorhizobium fredii NGR234 (1)
Waddlia chondrophila (1)
Larimichthys crocea (1)
Plecoglossus altivelis (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (609)
pride (243)
iProX (106)
PeptideAtlas (63)
MetaboLights (60)
EGA (15)
MassIVE (15)
dbGaP (3)
GNPS (3)
ENA (3)
BioModels (2)
geo (2)
jPOST (2)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (78)
Liver (44)
Epithelial cell (19)
Liver (10)
Testis (8)
Kidney (8)
Brain (7)
Macrophage (6)
Cell suspension culture (6)
Hepatocyte (6)
Lung (6)
Permanent cell line cell (6)
T cell (6)
Heart (5)
Sperm (4)
Malignant cell (4)
Embryonic stem cell (4)
Lymph node (4)
Others (3)
Blood serum (3)
Stem cell (3)
Embryo (3)
Leaf (3)
Fibroblast (3)
B cell (3)
Plasma Non-glyco (2)
Pancreatic stellate cell (2)
Nasopharyngeal epithelial cell (2)
Pancreatic cancer cell (2)
Mycelium (2)

Disease

Disease free (9)
Breast cancer (7)
Liver cancer (5)
Acute leukemia (4)
Renal cell carcinoma (3)
Colon cancer (3)
Thyroid cancer (2)
Hepatocellular carcinoma (2)
Brain glioblastoma multiforme (2)
Pancreatic ductal adenocarcinoma (2)
Cervix carcinoma (2)
Melanoma (2)
Pancreatic cancer (2)
Malignant neoplasm of ovary (2)
Endometrioid carcinoma (1)
B. dendrobatidis infection (1)
Represent tolerant CD4+ T cells that have not been activated (1)
Neuroblastoma (1)
Megakaryoblastic leukaemia (1)
Chronic myelogenous leukemia (1)
Ovarian cancer (1)
Gastric ulcer (1)
Neuropathic pain (1)
Eosinophilic esophagitis (1)
Lung carcinoma in situ (1)
Polycystic kidney disease (1)
Infertility (1)
Prion disease (1)
Leukemia (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (243)
Shotgun proteomics (120)
Mass spectrometry (51)
Bottom-up proteomics (41)
Data-dependent acquisition (26)
Affinity purification coupled with mass spectrometry proteomics (26)
Gel-based experiment (18)
Top-down proteomics (12)
Data-independent acquisition (11)
Mass spectrometry assay (7)
All-ion fragmentation (3)
NMR spectroscopy (2)
Proteogenomics (2)
Mass spectrometry imaging (2)
DiaPASEF (2)
SWATH MS (2)
SRM/MRM (2)
AB SOLiD 4 System (1)
Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
Metaproteomics (1)
Affinity proteomics (1)
MSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (18)
Illumina HiSeq 2000 (13)
NextSeq 500 (10)
Illumina HiSeq 2500 (8)
Illumina HiSeq 1500 (6)
HiSeq X Ten (5)
Illumina HiSeq 4000 (4)
Illumina Genome Analyzer IIx (3)
Illumina MiSeq (3)
Illumina Genome Analyzer II (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Macbook Pro 2018 (1)
BRB-seq tool and pipeline (1)
NucleoSpin RNA kit (Macherey-Nagel) (1)
Gilson Minipuls 3 (1)
-- (1)
TruSeq Stranded Total RNA with Ribo Zero Human/Mouse/Rat. (1)
CD Small RNA Library Prep Kit (1)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
Genepix (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina NovaSeq X (1)
NA (1)
Ion Torrent Proton (1)
TruSeq mRNA Sample Prep kit v2 (Illumina) (1)
MinION (1)
AB 5500xl Genetic Analyzer (1)
Synapt HDMS (1)

Publication Date

2014 (102)
2013 (86)
2015 (83)
2016 (76)
2023 (75)
2025 (70)
2022 (62)
2021 (58)
2010 (58)
2024 (55)
2012 (47)
2011 (44)
2026 (42)
2020 (29)
2019 (27)
2018 (20)
2009 (18)
2008 (15)
2007 (12)
2017 (10)
2005 (9)
2006 (7)
2004 (3)
2002 (1)
2001 (1)

UNIPROT ID/AC

A0A067FZ61_CITSI (1)
A0A067GQV1_CITSI (1)
2711.XP_006479514.1 (1)
A0A067DFZ9_CITSI (1)
A0A067FMS6_CITSI (1)
A0A067FN46_CITSI (1)
2711.XP_006488147.1 (1)
A0A067E153_CITSI (1)
A0A067GBL5_CITSI (1)
A0A067DAW0_CITSI (1)
A0A067F736_CITSI (1)
A0A067E4G7_CITSI (1)
A0A067F5B1_CITSI (1)
A0A067H4G6_CITSI (1)
A0A067GSQ9_CITSI (1)
A0A067F3J5_CITSI (1)
A0A067DL13_CITSI (1)
A0A067HBD9_CITSI (1)
A0A067FFQ8_CITSI (1)
A0A067FJK5_CITSI (1)
A0A067GDN4_CITSI (1)
A0A067GB16_CITSI (1)
A0A067E0C7_CITSI (1)
A0A067F7N5_CITSI (1)
A0A067F898_CITSI (1)
A0A067EZA9_CITSI (1)
2711.XP_006478245.1 (1)
A0A067DT91_CITSI (1)
A0A067E5T0_CITSI (1)
2711.XP_006487074.1 (1)

ENSEMBL ID

ENSG00000170477 (4)

CHEBI ID

CHEBI:17568 (23)
CHEBI:15756 (23)
CHEBI:17596 (21)
CHEBI:30769 (21)
CHEBI:16335 (20)
CHEBI:17351 (20)
CHEBI:17154 (19)
CHEBI:7916 (19)
CHEBI:16704 (19)
CHEBI:16027 (19)
CHEBI:16708 (18)
CHEBI:17509 (18)
CHEBI:17368 (18)
CHEBI:16196 (17)
CHEBI:17295 (17)
CHEBI:16040 (16)
CHEBI:16750 (16)
CHEBI:28875 (16)
CHEBI:15741 (16)
CHEBI:15891 (16)
CHEBI:16015 (16)
CHEBI:30915 (16)
CHEBI:28865 (16)
CHEBI:17533 (15)
CHEBI:28842 (15)
CHEBI:16610 (15)
CHEBI:17821 (15)
CHEBI:18012 (15)
CHEBI:32816 (15)
CHEBI:16919 (15)

Metabolite Name

Adenosine (18)
Uracil (16)
Inosine (16)
Hypoxanthine (15)
Guanosine (14)
Uridine (14)
Adenine (13)
Taurine (12)
Xanthine (12)
Glutathione (11)
L-Proline (11)
Spermidine (11)
Guanine (11)
Palmitic acid (11)
Creatine (11)
L-Phenylalanine (11)
Pantothenic acid (10)
Cytosine (10)
L-Glutamate (10)
Thymidine (10)
Creatinine (10)
L-Tyrosine (10)
Thymine (9)
L-Malic acid (9)
Benzoic acid (9)
L-Histidine (9)
Cholic acid (9)
Riboflavin (9)
L-Tryptophan (9)
Hippuric acid (9)

First Public Date

2023 (2)
2025 (1)

Modelling Approach

Random forest procedure (1)
Computational model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Stowers Institute for Medical Research (3)
Northwest University (3)
Zhejiang University (3)
University of Wisconsin-Madison (3)
college of pharmacy, Nankai university,Tianjin, 300353, China (2)
College of Agronomy, Jiangxi Agricultural University (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Institute of Biochemistry, University of Kiel (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Hebei Medical University (2)
Tianjin Medical University General Hospital (2)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
Nanjing Medical University (2)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
Tianjin Medical University Cancer Institute and Hospital (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Howard Hughes Medical Institute Beth Israel Deaconess Medical Center Harvard Medical School (2)
westlake.edu.cn (2)
Shanghaitech University (2)
School of Life Science, Fudan University (2)
State Key Laboratory for Infectious Disease Prevention and Control, Prion disease department, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People’s Republic of China (1)
Vascular Biology Center, Augusta University (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
Eye Center of the 2nd Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China (1)
National Key Discipline Laboratory, Department of Nutrition and Food Hygiene, School of Public Health, Harbin Medical University, Harbin, P. R. China (1)

IsPrivate

False (2)

Submitter Keywords

Machine Learning Model (2)
FAIR-AIML (1)

Modification

N6 (1)

Study type

Transcription profiling by array (305)
RNA-seq of coding RNA (136)
ChIP-seq (46)
Comparative genomic hybridization by array (24)
Methylation profiling by high throughput sequencing (17)
RNA-seq of non coding RNA (15)
ChIP-chip by tiling array (7)
Methylation profiling by array (7)
DNA-seq (6)
Transcription profiling by tiling array (4)
Transcription profiling by RT-PCR (4)
Other (4)
Genotyping by array (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by SAGE (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Single nucleus RNA sequencing (2)
FAIRE-seq (1)
Cell line - Single-cell sequencing (1)
Unknown experiment type (1)
MNase-seq (1)
Human - High-throughput sequencing (1)
Translation profiling (1)
Human - One-color microarray (1)
RNAi profiling by array (1)
CLIP-seq (1)
Antigen profiling (1)

Release Date

2025 (2724)
2022 (2338)
2023 (2195)
2024 (2070)
2021 (1765)
2020 (1273)
2019 (891)
2018 (860)
2017 (661)
2016 (581)
2015 (524)
2014 (417)
2026 (388)
2013 (271)
2012 (210)
2011 (136)
2010 (131)
2009 (70)
2008 (47)
2007 (40)
2005 (24)
2006 (20)
2004 (12)
2003 (5)
2002 (4)
2001 (4)
1998 (2)
2000 (1)

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Comparative genomic hybridization to study capsule switching between serogroup C and W of Neisseria meningitidis strains

Changing antigenic structure such as capsule polysaccharide is a common strategy for bacterial pathogen to evade host immune system. In this regard, the recent emergence of an invasive W:2a:P1.7-2,4 ST-11 strain in New Zealand, which is an uncommon pathogenic serogroup, was investigated for its gen...

ORGANISM(S): Neisseria meningitidis

2009-06-03 | E-MEXP-1910 | biostudies-arrayexpress

Comparative effects of W/O and O/W emulsions on the physicochemical properties of silver carp surimi gels.

Not available

S-EPMC10740075 | biostudies-literature

Transcription profiling of human cervical cancer patient biopsies to explore intratumour heterogeneity reveals that intratumor variation is low for most probe sets tested but that multiple biopsies are recommended for reliable estimates of gene expression

To explore intratumor heterogeneity in gene expression profiles from patients with cervical cancer. Experimental Design: A total of 33 biopsies were obtained from 11 patients, sampling between two and five different areas for each tumor.The extracted RNA was hybridized onto the Affymetrix U133 Plus ...

ORGANISM(S): Homo sapiens

2007-11-11 | E-GEOD-5787 | biostudies-arrayexpress

Homometallic Intervalence Charge Transfer Band of Co(II/III) Induced by Phase Transitions in a Heterometallic Co-W Charge Transfer Photomagnet.

Not available

S-EPMC12825454 | biostudies-literature

The first complete chloroplast genome of Briggsia chienii W. Y. Chun and its phylogenetic position within Gesneriaceae.

Not available

S-EPMC9246021 | biostudies-literature

Tire wear particles drive a systemic bioenergetic collapse in Eisenia fetida via coupled barrier erosion and metabolic-immune deadlock

As global vehicular electrification accelerates, the exponential accumulation of tire wear particles (TWPs) poses a pervasive threat to edaphic ecosystems. To elucidate the systemic bioenergetic impact of TWP toxicity, we performed a non-targeted metabolomic profiling of the soil sentinel earthwo...

2026-07-07 | MTBLS14967 | MetaboLights

Adsorption Site Regulations of [W-O]-Doped CoP Boosting the Hydrazine Oxidation-Coupled Hydrogen Evolution at Elevated Current Density.

Not available

S-EPMC10501108 | biostudies-literature

Rifamycin W Analogues from Amycolatopsis mediterranei S699 Δrif-orf5 Strain.

Not available

S-EPMC8301457 | biostudies-literature

Constructing Layered/Tunnel Biphasic Structure via Trace W-Substitution in Tunnel-Type Cathode for Elevating Sodium Ion Storage.

Not available

S-EPMC12113807 | biostudies-literature

Noble-Metal-Free Ni-W-O-Derived Catalysts for High-Capacity Hydrogen Production from Hydrazine Monohydrate.

Not available