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GenomicsChIP-seq analysis of CTCF binding sites in lymphocyte subsets [DN thymocytes]
In this study, we compare the binding pattern of CTCF at the T cell receptor alpha locus in different subsets of developing lymphocytes. For the ChIP-seq, input and immunoprecipitated DNA was given to The Scripps DNA Array Facility, where it was prepared for massively parallel sequencing on Illumin...
ORGANISM(S): Mus musculus 
2012-12-03 | E-GEOD-41739 | biostudies-arrayexpress
GenomicsChIP-seq analysis of CTCF binding sites in lymphocyte subsets [DP thymocytes]
In this study, we compare the binding pattern of CTCF at the T cell receptor alpha locus in different subsets of developing lymphocytes For the ChIP-seq, input and immunoprecipitated DNA was given to The Scripps DNA Array Facility, where it was prepared for massively parallel sequencing on Illumina...
ORGANISM(S): Mus musculus 
2012-12-03 | E-GEOD-41740 | biostudies-arrayexpress
GenomicsChIP-seq analysis of CTCF binding sites in lymphocyte subsets [pro-B cells]
In this study, we compare the binding pattern of CTCF at the T cell receptor alpha locus in different subsets of developing lymphocytes For the ChIP-seq, input and immunoprecipitated DNA was given to The Scripps DNA Array Facility, where it was prepared for massively parallel sequencing on Illumina...
ORGANISM(S): Mus musculus 
2012-12-03 | E-GEOD-41741 | biostudies-arrayexpress
ProteomicsPPM1D mutations are oncogenic drivers of de novo Diffuse Midline Glioma formation
Khadka P, Reitman ZJ, Lu S, Buchan G, Gionet G, Dubois F, Carvalho DM, Shih J, Zhang S, Greenwald N, Zack T, Shapira O, Pelton K, Hartley R, Bear H, Georgis Y, Jarmale S, Melanson R, Bonano K, Schoolcraft K, Miller PG, Condurat AL, Gonzalez E, Qian K, Morin E, Langhnoja J, Lupien L, Rendo V, Digiaco...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2021-11-17 | MSV000088404 | MassIVE
GenomicsChIP-seq analysis of CTCF binding sites in lymphocyte subsets
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Mus musculus 
2012-12-03 | E-GEOD-41743 | biostudies-arrayexpress
TranscriptomicsIdentification of Sox9-Regulated Pathways During Early Pancreas Organogenesis
Sox9 target genes were identified by comparing gene expression in Sox9-ablated versus wild-type pancreata using microarray analysis. Sox9 was conditionally ablated in the developing pancreas via recombination of a Sox9-flox allele (Kist et al., 2002) using the Pdx1-Cre transgene (Gu et al., 2002). T...
ORGANISM(S): Mus musculus 
2012-08-01 | E-GEOD-28669 | biostudies-arrayexpress
TranscriptomicsIdentification of Sox9-Regulated Pathways During Pancreas Development
This SuperSeries is composed of the following subset Series: GSE28669: Identification of Sox9-Regulated Pathways During Early Pancreas Organogenesis GSE28670: Identification of Sox9-Regulated Pathways During the Secondary Transition Stage of Pancreas Development Refer to individual Series
ORGANISM(S): Mus musculus 
2012-08-01 | E-GEOD-28671 | biostudies-arrayexpress
TranscriptomicsIdentification of Sox9-Regulated Pathways During the Secondary Transition Stage of Pancreas Development
Sox9 target genes were identified during the secondary transition stage of pancreas development by comparing gene expression in Sox9-ablated versus wild-type pancreata using microarray analysis. Sox9 was conditionally ablated during the secondary transition in the developing pancreas via recombinati...
ORGANISM(S): Mus musculus 
2012-08-01 | E-GEOD-28670 | biostudies-arrayexpress
TranscriptomicsAcute heat stress induces differential gene expressions in the testes of a broiler-type strain of Taiwan country chickens
To realize the gene expression in response to acute heat stress in chicken testis, we have employed whole genome microarray expression profiling as we have employed whole genome microarray expression profiling as a tool to identify genes response to acute heat stress. Male B strain Taiwan country ch...
ORGANISM(S): Gallus gallus 
2015-01-27 | E-GEOD-65279 | biostudies-arrayexpress
TranscriptomicsIdentification of WRKY22 direct targets under submergence in Arabidopsis with ChIP
To identify direct targets of WRKY22, we created a transgenic Arabidopsis line that expresses a c-myc epitope-tagged WRKY22 and used ChIP followed by microarray hybridization (ChIP-chip) to screen for candidates and validate the in vivo protein-DNA interactions with ChIP followed by quantitative PCR...
ORGANISM(S): Arabidopsis thaliana 
2013-07-03 | E-GEOD-40138 | biostudies-arrayexpress
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