Shikimate pathway

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Organisms

Aspergillus lentulus (7)
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Dendrobium sp. XMW-2002-13 (7)
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Organisms

Vitis vinifera (2)
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Euphorbia esula (1)
Populus tremula x Populus tremuloides (1)
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Repository

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Tissue

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Mass spectrometry (26)
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Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - positive - hilic (6)
Liquid Chromatography MS - negative - reverse-phase (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - (3)
LTQ XL (2)
Q Exactive Plus (2)
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Liquid Chromatography MS - alternating - hilic (2)
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Liquid Chromatography MS - negative (1)
TripleTOF 5600 (AB Sciex) (1)
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5975C Series GC/MSD (Agilent) (1)
Bruker (1)
Liquid Chromatography MS - negative - reversed-phase-c18 (1)
Liquid Chromatography MS - positive - reversed-phase-c18 (1)
Liquid Chromatography MS - positive (1)
Xevo QTof MS (Waters) (1)
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2016 (1)

CHEBI ID

CHEBI:17568 (16)
CHEBI:16119 (15)
CHEBI:28044 (14)
CHEBI:15428 (14)
CHEBI:16865 (13)
CHEBI:16335 (13)
CHEBI:16027 (13)
CHEBI:17992 (12)
CHEBI:30769 (12)
CHEBI:16750 (12)
CHEBI:16704 (11)
CHEBI:27897 (11)
CHEBI:15741 (11)
CHEBI:30915 (11)
CHEBI:16695 (11)
CHEBI:22652 (10)
CHEBI:17268 (10)
CHEBI:15422 (10)
CHEBI:16761 (10)
CHEBI:17596 (10)
CHEBI:17489 (10)
CHEBI:17202 (10)
CHEBI:17345 (10)
CHEBI:16856 (10)
CHEBI:17822 (10)
CHEBI:15978 (10)
CHEBI:17368 (10)
CHEBI:91005 (1)
CHEBI:64477 (1)
CHEBI:36208 (1)

Metabolite Name

Shikimate (21)
Uridine (15)
Uracil (14)
Melibiose (12)
Cholic acid (12)
Xanthine (12)
Xanthosine (11)
Phenylalanine (11)
Hypoxanthine (11)
Glycine (11)
Glutathione (11)
Inosine (11)
Lysine (10)
L-Tryptophan (10)
Dodecanoic acid (10)
ATP (10)
Adenosine (10)
Guanosine (10)
DGMP (9)
Arbutin (9)
DCMP (9)
Xanthurenic acid (9)
Phenyllactic acid (9)
Tyramine (9)
Succinate (9)
Adenine (9)
Creatinine (9)
Creatine (9)
ADP (9)
L-Histidine (9)

IsPrivate

False (2)

First Public Date

2022 (7)
2023 (6)
2024 (5)
2026 (3)
2025 (3)
2014 (3)
2015 (2)
2021 (1)
2019 (1)
2017 (1)

Classification

bacteria (1)

Modelling Approach

Ordinary differential equation model (1)
Constraint-based model (1)

Study type

Transcription profiling by array (8)
Unknown experiment type (2)
RNA-seq of coding RNA (2)

Release Date

2022 (46)
2023 (45)
2021 (38)
2020 (36)
2024 (34)
2025 (33)
2019 (26)
2018 (26)
2017 (17)
2016 (17)
2015 (16)
2014 (16)
2013 (16)
2012 (13)
2011 (13)
2009 (8)
2010 (7)
2008 (7)
2005 (4)
2026 (3)
2007 (3)
2006 (2)
2004 (1)
2002 (1)
2001 (1)
1998 (1)

Lab affiliation

Université Paris-Saclay, INRAE, AgroParisTech, MICALIS, Jouy-en-Josas, France (1)
Australian Proteome Analysis Facility, Macquarie University, Sydney NSW 2109, Australia (1)
Helmholtz-Centre for Environmental Research - UFZ GmbH Department of Molecular Toxicology Permoserstrasse 15, 04318 Leipzig, Germany (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Proteomics and Metabolomics Facility, University of Nebraska - Lincoln (1)
Department of Biological Sciences, University of Alberta (1)
Wageningen University (1)

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Adams2019 - The regulatory role of shikimate in plant phenylalanine metabolism

This is a mathematical model of phenylalanine metabolism in plants as influenced by shikimate, with specific evidence of how shikimate dynamics influence phenylalanine metabolism as a function of phenylalanine availability.

2024-09-02 | BIOMD0000000847 | BioModels

DhQS charged the shikimate pathway pathway in Thermus thermophilus HB27

PRJNA1327337 | ENA

Shikimate pathway dependent catabolism

PRJNA1133925 | ENA

Structural and Biochemical Analyses Reveal that Chlorogenic Acid Inhibits the Shikimate Pathway.

Not available

S-EPMC7925078 | biostudies-literature

Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements.

Not available

S-EPMC1563581 | biostudies-literature

Structural basis for shikimate-binding specificity of Helicobacter pylori shikimate kinase.