Shin H H - OmicsDI

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Unknown (5834)
Transcriptomics (158)
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Models (2)
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Other (1)

Organisms

Homo sapiens (161)
Mus musculus (79)
Caenorhabditis elegans (27)
Arabidopsis thaliana (8)
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Xenopus laevis (2)
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Drosophila melanogaster (2)
rat gut metagenome (1)
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Acinetobacter baumannii ATCC 17978 (1)
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Organisms

Homo sapiens (1)
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Repository

biostudies-arrayexpress (189)
pride (93)
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Tissue

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Disease

Disease free (3)
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Not Available (1)
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Salmonellosis (1)
Toxic encephalopathy (1)
Viral infectious disease (1)

Technology Type

Mass Spectrometry (93)
Shotgun proteomics (56)
Bottom-up proteomics (17)
Data-dependent acquisition (13)
Affinity purification coupled with mass spectrometry proteomics (9)
Gel-based experiment (8)
Mass spectrometry (6)
DiaPASEF (2)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Data-independent acquisition (1)
Glycoproteomics (1)
HDMSE (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (3)
Orbitrap Fusion (3)
LTQ Orbitrap (2)
LTQ Orbitrap Elite (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Nanodrop (1)
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Instrument (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
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Q Exactive (1)
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Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
MS Imaging - (1)
Tandem Gas Chromatography MS - (1)
LTQ (1)

Publication Date

2011 (47)
2020 (35)
2021 (29)
2010 (28)
2013 (24)
2012 (22)
2014 (21)
2023 (17)
2025 (17)
2015 (16)
2026 (14)
2024 (13)
2008 (10)
2022 (8)
2018 (8)
2016 (6)
2007 (6)
2019 (6)
2009 (3)
2004 (2)
2017 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
2ABD_HUMAN (17)
3BHS2_HUMAN (17)
3BP1_HUMAN (17)
3BP5L_HUMAN (17)
3HAO_HUMAN (17)
3HIDH_HUMAN (17)
3MG_HUMAN (17)
41_HUMAN (17)
4ET_HUMAN (17)
4F2_HUMAN (17)
5NT3A_HUMAN (17)
5NTC_HUMAN (17)
5NTD_HUMAN (17)
6PGD_HUMAN (17)
6PGL_HUMAN (17)
9606.ENSP00000228938 (17)
9606.ENSP00000233596 (17)

CHEBI ID

CHEBI:32816 (4)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16865 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17992 (3)
CHEBI:18183 (3)
CHEBI:30769 (3)
CHEBI:33508 (3)
CHEBI:15318 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15725 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15978 (2)
CHEBI:16015 (2)
CHEBI:16027 (2)
CHEBI:16108 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16414 (2)
CHEBI:16467 (2)
CHEBI:16643 (2)
CHEBI:16695 (2)
CHEBI:16708 (2)
CHEBI:16828 (2)
CHEBI:16857 (2)

Metabolite Name

Hypoxanthine (3)
Palmitic acid (3)
Sucrose (3)
Adenosine monophosphate (2)
Asparagine (2)
Citric acid (2)
D-Glucose (2)
D-Ribose (2)
Fructose (2)
Glycerol (2)
Glycolic acid (2)
Guanine (2)
Inosine (2)
Isoleucine (2)
L-Cysteine (2)
L-Histidine (2)
L-Isoleucine (2)
L-Leucine (2)
L-Lysine (2)
L-Malic acid (2)
L-Methionine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Threonine (2)
L-Tryptophan (2)
L-Tyrosine (2)
Leucine (2)
Malic acid (2)
Melibiose (2)

IsPrivate

False (2)

First Public Date

2024 (1)
2020 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (110)
ChIP-seq (27)
RNA-seq of coding RNA (16)
ChIP-chip by tiling array (8)
Methylation profiling by array (6)
Proteomic profiling by array (4)
Genotyping by array (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Other (2)
Transcription profiling by MPSS (1)
Transcription profiling by SAGE (1)
Human - Single-cell sequencing (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2025 (710)
2022 (684)
2023 (682)
2021 (628)
2024 (611)
2020 (520)
2019 (402)
2018 (334)
2017 (247)
2016 (224)
2015 (205)
2014 (184)
2012 (101)
2013 (98)
2026 (97)
2011 (96)
2010 (72)
2008 (38)
2009 (21)
2007 (17)
2005 (16)
2006 (14)
2004 (8)
2003 (5)
2002 (4)
2000 (3)
2001 (1)
1999 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (4)
Cancer Research Center of Toulouse, INSERM UMR 1037, 31037 Toulouse, France Université Toulouse III Paul Sabatier, 31330 Toulouse, France (2)
Center for Natural Product Systems Biology, Korea Institute of Science and Technology (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
Korea Institute of Science and Technology (2)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (2)
Yonsei Proteome Research Center (2)
Asan Medical Center, Clinical Proteomics Core, Republic of Korea (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Associate Professor, Department of Laboratory Mediciene, UCSF (1)
BOKU University, Vienna, Austria (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Biomedical Omics Research, Korea Basic Science Institute, Cheongju, Korea (1)
Cancer Program, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC, 3800, Australia (1)
Cancer Program, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia. Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia. (1)
Center for Plant Aging Research, Institute for Basic Science, and Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 42988, Republic of Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Center for theragnosis, Korea Institute of Science and Technology (1)
Centre de Recherches en Cancérologie de Toulouse (CRCT), Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Toulouse, France (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Daegu Catholic University School of Medicine (1)
Dana Farber Cancer Institute (1)
Dana Farber Cancer Institute, Boston, MA Harvard Medical School, Boston, MA (1)
Department of Biochemistry, College of Life Science and Technology, Institute for Bio-medical Convergence Science and Technology, Yonsei University, Seoul, Republic of Korea (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA 91010 (1)

Tags

xref:PubMed:33293463 (1)
xref:PubMed:16098828 (1)

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Report on the complete organelle genomes of Orobanche Filicicola Nakai ex Hyun, Y. S. Lim & H. C. Shin (Orobanchaceae): insights from comparison with Orobanchaceae plant genomes.

Not available

S-EPMC11834515 | biostudies-literature

Mislocalization of h channel subunits underlies h channelopathy in temporal lobe epilepsy.

Not available

S-EPMC2626192 | biostudies-literature

Genome-Wide Association Study for Screening and Identifying Potential Shin Color Loci in Ducks.

Not available

S-EPMC9407491 | biostudies-literature

Identification of pathogenic microRNAs in Helicobacter pylori-associated gastric cancer

To identify dysregulated miRNA(s) upon infection with H. pylori during different pre-malignant and malignant stages of gastric cancer in a mouse model miRNA expression in pre-neoplastic and neoplastic lesions in murine stomachs induced by H. pylori and N-methyl-N-nitrosourea (MNU) after 12 months wa...

ORGANISM(S): Mus musculus

2015-03-04 | E-GEOD-62503 | biostudies-arrayexpress

Blue emission at atomically sharp 1D heterojunctions between graphene and h-BN.

Not available

S-EPMC7585426 | biostudies-literature

Inhibition of Pim1 kinase prevents peanut allergy by enhancing Runx3 expression and suppressing T(H)2 and T(H)17 T-cell differentiation.

Not available

S-EPMC3652680 | biostudies-literature

Degradome sequencing from S. castellii

The RNA-induced silencing complex, comprising Argonaute and guide RNA, mediates RNA interference. Here we report the 3.2 M-CM-^E crystal structure of Kluyveromyces Argonaute (KpAGO) fortuitously complexed with guide RNA originating from small-RNA duplexes autonomously loaded by recombinant KpAGO. De...

ORGANISM(S): Naumovozyma castellii

2012-05-14 | E-GEOD-37723 | biostudies-arrayexpress

Maternal H. pylori is associated with differential fecal microbiota in infants born by vaginal delivery.

Not available

S-EPMC7190710 | biostudies-literature

Molecular Rationale for Partitioning between C-H and C-F Bond Activation in Heme-Dependent Tyrosine Hydroxylase.

Not available

S-EPMC8283942 | biostudies-literature

GiantsosAdams2013 - Growth of glycocalyx under static conditions

Giantsos-Adams2013 - Growth of glycocalyx under static conditions This model is described in the article: Heparan Sulfate Regrowth Profiles Under Laminar Shear Flow Following Enzymatic Degradation. Giantsos-Adams KM, Koo AJ, Song...

2024-09-02 | BIOMD0000000830 | BioModels

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6195 Results

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