Shin M M - OmicsDI

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Unknown (4731)
Transcriptomics (157)
Proteomics (139)
Genomics (64)
Metabolomics (7)
Models (3)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (107)
Mus musculus (62)
Caenorhabditis elegans (26)
Arabidopsis thaliana (7)
Rattus norvegicus (5)
Saccharomyces cerevisiae (4)
Xenopus laevis (3)
Capsicum annuum (2)
Glycine max (2)
Cardamine sp. SIM-2007 (1)
rat gut metagenome (1)
Burkholderia glumae BGR1 (1)
Acinetobacter baumannii ATCC 17978 (1)
Nannochloropsis oceanica (1)
Cavia porcellus (1)
Naumovozyma castellii (1)
Callithrix jacchus (1)
Chlamydomonas reinhardtii (1)
Macaca fascicularis (1)
Aedes aegypti (1)
Bos taurus (1)
Ovis aries (1)
Sus scrofa (1)
Danio rerio (1)
Helicobacter pylori (1)
Helicobacter pylori F16 (1)
Helicobacter pylori F30 (1)
Helicobacter pylori F32 (1)
Helicobacter pylori OK113 (1)
Helicobacter pylori OK310 (1)

Organisms

Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (198)
pride (91)
EGA (24)
PAXDB (17)
jPOST (15)
MassIVE (10)
MetaboLights (7)
BioModels (3)
PeptideAtlas (2)
ENA (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (37)
Epithelial cell (10)
Brain (7)
Permanent cell line cell (4)
Blood (3)
Leaf (3)
Blood cell (2)
Blood plasma (2)
Microglial cell (2)
Stem cell (2)
Adipocyte cell line (1)
Adipose tissue (1)
Astrocyte (1)
Blood serum (1)
Bloodstream form (1)
Bone marrow (1)
Breast cancer cell (1)
Central nervous system neuron (1)
Colon (1)
Colorectal cancer cell (1)
Cyst (1)
Ear hair cell (1)
Early embryonic cell (1)
Embryo (1)
Embryonic blood (1)
Fat cell (1)
Fibroblast (1)
Forebrain (1)
Fruit (1)
Heart (1)

Disease

Colon cancer (4)
Disease free (4)
Parkinson's disease (3)
Alzheimer's disease (2)
Brain cancer (2)
Breast cancer (2)
Cervix carcinoma (2)
Hepatocellular carcinoma (2)
Lung cancer (2)
Neuroblastoma-undifferentiated (1)
Not Available (1)
Bacterial infectious disease (1)
Crohn's colitis (1)
Dementia (1)
Mental depression (1)
Multiple sclerosis (1)
Neurodegenerative disease (1)
Pancreatic intraductal papillary-mucinous neoplasm (1)
Toxic encephalopathy (1)
Type 2 diabetes mellitus (1)
Viral infectious disease (1)

Technology Type

Mass Spectrometry (91)
Shotgun proteomics (64)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (10)
Mass spectrometry (7)
Data-dependent acquisition (7)
Gel-based experiment (6)
SWATH MS (2)
Illumina 610K Quad, Illumina 1.2M (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
Glycoproteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
Orbitrap Fusion (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
LTQ Orbitrap Velos (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
BSL2 Laboratory (1)
Illumina Genome Analyzer (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Instrument (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Exploris 480 (1)
Thermo Orbitrap Elite mass spectrometer (1)
TripleTOF 5600 (1)
Tandem Gas Chromatography MS - (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
MS Imaging - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Unknown (1)
LTQ (1)

Publication Date

2011 (38)
2020 (33)
2014 (32)
2010 (31)
2015 (29)
2021 (29)
2023 (23)
2013 (22)
2012 (21)
2025 (14)
2008 (11)
2024 (10)
2022 (10)
2019 (8)
2018 (7)
2026 (7)
2016 (6)
2007 (5)
2005 (2)
2017 (2)
2009 (1)
2004 (1)
2006 (1)

UNIPROT ID/AC

1433B_HUMAN (17)
1433E_HUMAN (17)
1433F_HUMAN (17)
1433G_HUMAN (17)
1433S_HUMAN (17)
1433T_HUMAN (17)
1433Z_HUMAN (17)
2A5A_HUMAN (17)
2A5D_HUMAN (17)
2A5E_HUMAN (17)
2A5G_HUMAN (17)
2AAA_HUMAN (17)
2ABA_HUMAN (17)
2ABD_HUMAN (17)
3BHS2_HUMAN (17)
3BP1_HUMAN (17)
3BP5L_HUMAN (17)
3HAO_HUMAN (17)
3HIDH_HUMAN (17)
3MG_HUMAN (17)
41_HUMAN (17)
4ET_HUMAN (17)
4F2_HUMAN (17)
5NT3A_HUMAN (17)
5NTC_HUMAN (17)
5NTD_HUMAN (17)
6PGD_HUMAN (17)
6PGL_HUMAN (17)
9606.ENSP00000228938 (17)
9606.ENSP00000233596 (17)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:32816 (4)
CHEBI:30769 (4)
CHEBI:17992 (3)
CHEBI:33508 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:16865 (3)
CHEBI:17568 (3)
CHEBI:18183 (3)
CHEBI:17596 (3)
CHEBI:15756 (3)
CHEBI:17368 (3)
CHEBI:76341 (2)
CHEBI:15725 (2)
CHEBI:30813 (2)
CHEBI:28997 (2)
CHEBI:30817 (2)
CHEBI:17768 (2)
CHEBI:17057 (2)
CHEBI:40410 (2)
CHEBI:28053 (2)
CHEBI:17634 (2)
CHEBI:35704 (2)
CHEBI:17172 (2)
CHEBI:17256 (2)
CHEBI:17822 (2)
CHEBI:16709 (2)
CHEBI:26271 (2)
CHEBI:17202 (2)
CHEBI:17230 (2)

Metabolite Name

Palmitic acid (3)
Sucrose (3)
Hypoxanthine (3)
Pyruvic acid (2)
D-Glucose (2)
Leucine (2)
L-Cysteine (2)
Glycerol (2)
Glycolic acid (2)
Uracil (2)
Valine (2)
Melibiose (2)
Thymine (2)
L-Lysine (2)
L-Proline (2)
Adenosine monophosphate (2)
L-Malic acid (2)
Putrescine (2)
Ornithine (2)
Succinic acid (2)
L-Threonine (2)
L-Histidine (2)
Nicotinamide (2)
Citric acid (2)
Stearic acid (2)
Malic acid (2)
Asparagine (2)
Serine (2)
Fructose (2)
Guanine (2)

First Public Date

2020 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
Cancer Research Center of Toulouse, INSERM UMR 1037, 31037 Toulouse, France Université Toulouse III Paul Sabatier, 31330 Toulouse, France (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
EPFL (2)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (2)
Amgen Inc. (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
BOKU University, Vienna, Austria (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
CEA, CNRS, Aix-Marseille University, Institute of Biosciences and Biotechnologies of Aix-Marseille (BIAM), UMR7265, CEA Cadarache, 13108 Saint-Paul-lez-Durance, France (1)
Cancer Program, Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria 3800, Australia. (1)
Center for Plant Aging Research, Institute for Basic Science, and Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 42988, Republic of Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Center for theragnosis, Korea Institute of Science and Technology (1)
Centre de Recherches en Cancérologie de Toulouse (CRCT), Université de Toulouse, Inserm, CNRS, Université Toulouse III-Paul Sabatier, Toulouse, France (1)
Chief, Epithelial Signaling and Transport Section NIH, NIDCR, Building 10, Room 1N-112, Bethesda MD 20892. U.S.A. (1)
Dana Farber Cancer Institute (1)
Dana Farber Cancer Institute, Boston, MA Harvard Medical School, Boston, MA (1)
Department of Biological Chemistry, Graduate School of Pharmaceutical Sciences, Nagoya City University (1)
Department of Biomedical Sciences, Seoul National University College of Medicine 103 Daehakro Seoul 30380, Korea (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA 91010 (1)
Department of Life Sciences and Division of Integrative Biosciences and Biotechnology Pohang University of Science and Technology Pohang 790-784, Republic of Korea (1)
Department of Life Sciences, POSTECH, Pohang, Republic of Korea (1)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (South Korea) (1)
Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA (1)
Department of New Biology, DGIST, Daegu 42988, Republic of Korea (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (93)
ChIP-seq (33)
RNA-seq of coding RNA (26)
Methylation profiling by array (10)
ChIP-chip by tiling array (8)
Comparative genomic hybridization by array (6)
DNA-seq (5)
Unknown experiment type (4)
Genotyping by array (3)
Proteomic profiling by array (3)
RNA-seq of non coding RNA (3)
Transcription profiling by RT-PCR (2)
Other (2)

Release Date

2025 (575)
2022 (565)
2021 (509)
2023 (501)
2024 (476)
2020 (409)
2019 (329)
2018 (271)
2017 (210)
2015 (195)
2016 (179)
2014 (163)
2013 (99)
2012 (97)
2011 (89)
2010 (77)
2026 (67)
2009 (33)
2008 (31)
2007 (15)
2006 (13)
2005 (11)
2004 (6)
2000 (3)
2002 (2)
2003 (1)
2001 (1)
1999 (1)
1998 (1)

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Genome-Wide Association Study for Screening and Identifying Potential Shin Color Loci in Ducks.

Not available

S-EPMC9407491 | biostudies-literature

Expression data from control siRNA and M-NM-2-catenin siRNA transfected cultured mouse dermal cells

M-NM-2-catenin activity of dermal cells is crucial for hair follicle neogenesis and strongly suggest that transcriptional target genes of M-NM-2-catenin pathway are essential for maintaining trichogenicity of dermal cells. We used microarrays to identify genes targeted by the M-NM-2-catenin pathway ...

ORGANISM(S): Mus musculus

2013-09-03 | E-GEOD-50525 | biostudies-arrayexpress

Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta.

Not available

S-EPMC2287170 | biostudies-literature

Expression data from brain, liver and spleen of Npc1-/- mice

Niemann-Pick Type C (NPC) disease is a rare, genetic, lysosomal disorder with progressive neurodegeneration. Poor understanding of the pathophysiology and lack of blood-based diagnostic markers are major hurdles in the treatment and management of NPC and several additional neurological, lysosomal di...

ORGANISM(S): Mus musculus

2012-12-27 | E-GEOD-39621 | biostudies-arrayexpress

Chromosome-encoded AmpC and CTX-M extended-spectrum β-lactamases in clinical isolates of Proteus mirabilis from Korea.

Not available

S-EPMC3067170 | biostudies-literature

M-PAST score is better than MAST score for the diagnosis of active fibrotic nonalcoholic steatohepatitis.

Not available

S-EPMC10792544 | biostudies-literature

Bioinspired M-13 bacteriophage-based photonic nose for differential cell recognition.

Not available

S-EPMC5452260 | biostudies-literature

Retraction for Shin and Ko, "A Plasmid Bearing the bla_CTX-M-15 Gene and Phage P1-Like Sequences from a Klebsiella pneumoniae Isolate".