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ProteomicsZebrafish embryo T18°C MAX QUANT
Effect of temperature variation on zebra fish health and behaviour Water temperature is an important environmental parameter that influences the distribution and the health of fishes. Moreover, temperature has a central role in ectothermic animals affecting their physiology and behaviour. The aim of...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2024-01-26 | PXD009934 | Pride
Shotgun label free zebra fish 
TranscriptomicsSingle-cell RNA sequencing data of zebrafish lymphatic and venous endothelial cells at different developmental stages (36 hpf, 48 hpf, 120 hpf (5 dpf) and 168 hpf (7 dpf))
This dataset contains single-cell RNA sequencing (scRNA-seq) profiles of zebrafish venous and lymphatic endothelial cells across development. Endothelial cells were isolated by FACS from transgenic zebrafish embryos and larvae at 36 hpf, 48 hpf, 5 dpf (120 hpf), and 7 dpf (168 hpf) using endothelial...
ORGANISM(S): Danio rerio 
2026-09-28 | E-MTAB-16797 | biostudies-arrayexpress
TranscriptomicsIdentification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing
We describe a method for isolating RNA suitable for high-throughput RNA sequencing (RNA-seq) from small numbers of fluorescently labeled cells isolated from live zebrafish (Danio rerio) embryos without using costly, commercially available columns. This method ensures high cell viability after dissoc...
ORGANISM(S): Danio rerio 
2014-09-08 | E-GEOD-61202 | biostudies-arrayexpress
ProteomicsBCL2L13 regulates sarcoplasmic reticulum-mitochondria calcium flux in skeletal muscle
The physical connection between mitochondria and endoplasmic or sarcoplasmic reticulum is an essential signaling hub to ensure organelle and cellular functions. In skeletal muscle, ER/SR-mitochondria calcium (Ca2+) signaling is crucial to maintain cellular homeostasis during physical activity. High ...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2024-07-25 | PXD044765 | Pride
Endoplasmic reticulum mitochondria contact sites ermcs Mitochondria-associated membranes mams C2c12 Bcl-2 family Mitochondria-er contact sites mercs Zebrafish 
TranscriptomicsA high resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies
To monitor the relative regulatory contributions of RNA production, processing and degradation, we sampled RNA from mouse DCs every 15 minutes, for the first 3 hours of their response to LPS (13 samples in total), following a short (10 minute) metabolic labeling pulse with 4sU preceding the sampled ...
ORGANISM(S): Mus musculus 
2014-12-16 | E-GEOD-56977 | biostudies-arrayexpress
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