Silique - OmicsDI

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Unknown (241)
Genomics (101)
Transcriptomics (59)
Proteomics (28)
Methylation profiling (1)
Metabolomics (1)

Organisms

Arabidopsis thaliana (48)
Aerococcus urinae NBRC 15544 = CCUG 36881 (20)
Alteromonadales (20)
Apostichopus japonicus (20)
Canis lupus familiaris (20)
Carya cathayensis (20)
Clostridioides difficile 630 (20)
Cyanophora paradoxa (20)
Ensifer adhaerens (20)
Enterococcus faecalis (20)
Globicatella sanguinis (20)
Halictus scabiosae (20)
Histomonas meleagridis (20)
Human immunodeficiency virus 1 (20)
Listeria monocytogenes (20)
Listeria monocytogenes EGD-e (20)
Methylohalobius crimeensis 10Ki (20)
Mus musculus (20)
Mycobacterium tuberculosis (20)
Ophrys garganica (20)
Brassica napus (15)
Brassica rapa (2)
Brassica (2)
Brassica oleracea (1)
Brassica rapa subsp. chinensis (1)
Brachypodium distachyon (1)
Arabidopsis arenosa x Arabidopsis thaliana (1)
Brassica juncea (1)
Vitis rotundifolia (1)
Arabidopsis (1)

Organisms

Arabidopsis thaliana (30)
Brassica napus (21)
Brassica napus var. napus (2)
Brassica rapa (2)
Aconitum carmichaelii (1)
Arabidopsis thaliana x Arabidopsis arenosa (1)
Vitis rotundifolia (1)
Brassica juncea (1)
Arabidopsis arenosa x Arabidopsis thaliana (1)
Brassica oleracea (1)
Brassica rapa subsp. rapa (1)
Oryza sativa Japonica Group (1)
unidentified (1)

Repository

ENA (88)
geo (42)
biostudies-arrayexpress (28)
pride (20)
PAXDB (8)
ExpressionAtlas (3)
MetaboLights (1)

Tissue

Silique (15)
Root (9)
Plant cell (9)
Flower (8)
Leaf (8)
Seed (8)
Stem (6)
Rosette (6)
Cotyledon (5)
Carpel (4)
Cell culture (4)
Hypocotyl (3)
Shoot (3)
Pollen (3)
Plant callus (2)
Sepal (2)
Cauline leaf (2)
Petal (2)
Stamen (2)
Mixed shoot apical meristem, cotyledon and first leaves (1)
Petiole (1)
Flower pedicel (1)
Fruit valve (1)
Stem internode (1)
Adult vascular leaf (1)
Stem node (1)
Fruit septum (1)
Rosette leaf (1)
Root tip (1)
Inflorescence (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Gel-based experiment (2)
Mass spectrometry (1)
SWATH MS (1)

Instrument Platform

Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2500 (2)
ThermoFinnigan LTQ (2)
Affymetrix GeneChip (1)
Illumina HiSeq 3000 (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2020 (9)
2016 (9)
2021 (9)
2019 (9)
2017 (8)
2015 (7)
2023 (7)
2012 (6)
2018 (5)
2014 (5)
2013 (4)
2007 (4)
2010 (3)
2009 (3)
2008 (3)
2022 (2)
2004 (2)
2026 (2)
2024 (2)
2025 (1)
2005 (1)
2011 (1)

UNIPROT ID/AC

14332_ARATH (8)
14333_ARATH (8)
14335_ARATH (8)
14337_ARATH (8)
2A5B_ARATH (8)
2A5Z_ARATH (8)
2AAA_ARATH (8)
2AAB_ARATH (8)
2AAG_ARATH (8)
2ABB_ARATH (8)
3HID1_ARATH (8)
3HID2_ARATH (8)
4CL1_ARATH (8)
4CL2_ARATH (8)
4CL3_ARATH (8)
4CL4_ARATH (8)
4CLL7_ARATH (8)
4CLL9_ARATH (8)
4CLLA_ARATH (8)
5FCL_ARATH (8)
6PGD1_ARATH (8)
6PGD2_ARATH (8)
6PGD3_ARATH (8)
6PGL2_ARATH (8)
6PGL3_ARATH (8)
6PGL5_ARATH (8)
A0A178W0K0_ARATH (8)
A0A1I9LMR2_ARATH (8)
A0A1I9LNZ8_ARATH (8)
A0A1P8AZS5_ARATH (8)

CHEBI ID

CHEBI:139429 (1)
CHEBI:139434 (1)
CHEBI:139451 (1)
CHEBI:139435 (1)
CHEBI:139448 (1)
CHEBI:139460 (1)
CHEBI:139442 (1)
CHEBI:139410 (1)
CHEBI:139428 (1)
CHEBI:139404 (1)
CHEBI:139422 (1)
CHEBI:139425 (1)
CHEBI:139440 (1)
CHEBI:139432 (1)
CHEBI:139450 (1)
CHEBI:139439 (1)
CHEBI:139456 (1)
CHEBI:94167 (1)
CHEBI:139407 (1)
CHEBI:139423 (1)
CHEBI:139459 (1)
CHEBI:139403 (1)
CHEBI:139437 (1)
CHEBI:139405 (1)
CHEBI:139414 (1)
CHEBI:139470 (1)
CHEBI:139402 (1)
CHEBI:139433 (1)
CHEBI:139409 (1)
CHEBI:139454 (1)

Metabolite Name

4-O-trans-caffeoylquinic acid (1)
2-hydroxy-2-(4-hydroxybenzyl)succinic acid (1)
(3R,5R)-3,4,5-tris{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}-1-hydroxycyclohexane-1-carboxylic acid (1)
3-(4-hydroxyphenyl)-1-{2,4,6-trihydroxy-3,5-bis(2S,3R,4R,5S,6R)[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]phenyl}propan-1-one (1)
(1S,3S,4R,5R)-3-{[(2E)-3-(3,4-dihydroxyphenyl)-2-propenoyl]oxy}-1,4,5-trihydroxycyclohexanecarboxylic acid (1)
(3E)-1-hydroxy-4-[(1R)-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-buten-2-yl beta-D-glucopyranoside (1)
(2E)-3-[4-(beta-D-Glucopyranosyloxy)-3-methoxyphenyl]acrylic acid (1)
(2E)-N-[2-(3,4-dihydroxyphenyl)ethyl]-3-(3,4-dimethoxyphenyl)acrylamide (1)
(3R)-3,7-dimethyl-1,6-octadien-3-yl 6-O-alpha-L-arabinopyranosyl-beta-D-glucopyranoside (1)
{2-[5-(hexopyranosyloxy)pent-2-en-1-yl]-3-oxocyclopentyl}acetic acid (1)
5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-1-benzopyran-3-yl 6-O-(6-deoxyhexopyranosyl)hexopyranoside (1)
8-[6-(3-{[6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranosyl]oxy}-5,7-dihydroxy-4-oxo-4H-1-benzopyran-2-yl)-2,3-dihydroxyphenyl]-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-1-benzopyran-3-yl 6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside (1)
Kaempferol 3-O-beta-D-galactoside (1)
Kaempferol 3-O-beta-D-glucoside (1)
2,6-dihydroxy-2-[(4-hydroxyphenyl)methyl]-3-oxo-2,3-dihydro-1-benzofuran-4-yl hexopyranoside (1)
5-{4-[4-(hexopyranosyloxy)-3,5-dimethoxyphenyl]tetrahydro-1H,3H-furo[3,4-c]furan-1-yl}-2-methoxyphenyl hexopyranoside (1)
[4-(4-hydroxy-3-methoxybenzyl)-2-(4-hydroxy-3-methoxyphenyl)tetrahydro-3-furanyl]methyl hexopyranoside (1)
4-[4-(4-hydroxy-3-methoxyphenyl)tetrahydro-1H,3H-furo[3,4-c]furan-1-yl]-2-methoxyphenyl hexopyranoside (1)
(3E)-4-[(1S)-1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-buten-2-yl beta-D-glucopyranoside (1)
Dehydroabietic acid (1)
Trans-5-O-(4-coumaroyl)-D-quinic acid (1)
4-{(1S,3aR,4S,6aR)-4-[4-(hexopyranosyloxy)-3-methoxyphenyl]tetrahydro-1H,3H-furo[3,4-c]furan-1-yl}-2-methoxyphenyl hexopyranoside (1)
3,5-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-chromen-7-yl hexopyranoside (1)
Nicotiflorin (1)
Kaempferol-3-glucoside-3''-rhamnoside (1)
(+)-syringaresinol beta-D-glucoside (1)
Sibiricose A1 (1)
Keioside (1)
Gaultherin (1)
Sinapoyl D-glucoside (1)

First Public Date

2014 (11)
2024 (10)
2021 (10)
2017 (9)
2023 (8)
2026 (7)
2019 (6)
2018 (6)
2025 (5)
2022 (5)
2016 (4)
2015 (3)
2020 (2)
2013 (2)

Modification

Not available (1)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (8)
RNA-seq of non coding RNA (3)
Unknown experiment type (1)
Plant - High-throughput sequencing (1)

Release Date

2021 (31)
2022 (28)
2020 (28)
2014 (20)
2023 (20)
2025 (18)
2015 (16)
2017 (16)
2016 (15)
2024 (15)
2019 (15)
2018 (14)
2013 (9)
2010 (6)
2012 (4)
2009 (3)
2008 (3)
2007 (2)
2011 (2)
2005 (1)
2004 (1)
2026 (1)
2006 (1)

Lab affiliation

Hong Kong University of Science and Technology (2)
Institute of Plant Science (2)
NREL (2)
TUM (2)
Bioscience Core Laboratory King Abdullah University of Science & Technology Saudi Arabia Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
Bioscience Core laboratory King Abdullah University of Science & Technology Saudi Arabia (1)
Core Labs, King Abdullah University of Science and Technology, Thuwal, KSA (1)
Department of Biological Sciences, Faculty of Science, National University of Singapore, Singapore 117543, Singapore. Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore. (1)
Faculty of Biology, Medicine and Health University of Manchester (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (1)
Head of Department Group Leader Department Crop Genetics John Innes Centre Norwich UK, NR4 7UH (1)
Inner Mongolia Agricultural University (1)
Inner Mongolia Key Laboratory of Plant Stress Physiology and Molecular Biology, Inner Mongolia Agricultural University (1)
Leibniz University Hannover Institute of plant genetics Department for plant proteomics Herrenhaeuser Str. 2 30419 Hannover, Germany (1)
University of Goettingen Albrecht-von-Haller Institute for Plant Sciences Department of Plant Biochemistry (1)
University of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Department for Plant Biochemistry (1)

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Brassica napus differentially expressed genes in seeds and silique walls

Identification of differentially expressed genes in seeds and silique walls at the seed-filling stage in Brassica napus through transcriptional profiling Two tissues, three biological replicates, one biological duplicate with two technical replicates

ORGANISM(S): Brassica napus

2016-07-03 | E-GEOD-61598 | biostudies-arrayexpress

PRJNA418924 | ENA

Targets of FRUITFULL in the pistil/silique [ChIP-Seq]

To learn more about the role of FRUITFULL (FUL), in pistil/silique development, we performed a ChIP-seq experiment to identify direct targets of FUL in the pistil/silique.

ORGANISM(S): Arabidopsis thaliana

2017-11-03 | GSE79554 | GEO

MicroRNAs (miRNAs) are a class of non-coding small RNAs (sRNAs) that play crucial regulatory roles in various developmental processes. Silique length indirectly influences seed yield in rapeseed (Brassica napus); however, the molecular roles of miRNAs in silique length are largely unknown. Here, bac...

ORGANISM(S): Brassica napus

2019-08-01 | GSE107056 | GEO

BnLATE, a Cys2/His2-Type Zinc-Finger Protein, Enhances Silique Shattering Resistance by Negatively Regulating Lignin Accumulation in the Silique Walls of Brassica napus.

Not available

S-EPMC5231383 | biostudies-literature

Brassica napus differentially expressed genes in seeds and silique walls

Identification of differentially expressed genes in seeds and silique walls at the seed-filling stage in Brassica napus through transcriptional profiling

ORGANISM(S): Brassica Brassica napus

2016-01-01 | GSE61598 | GEO

Identification of genomic regions associated with multi-silique trait in Brassica napus.

Not available

S-EPMC6480887 | biostudies-literature

Exploring silique number in Brassica napus L.: Genetic and molecular advances for improving yield.

Not available

S-EPMC11182599 | biostudies-literature

QTL mapping for seed density per silique in Brassica napus.

Not available

S-EPMC9840639 | biostudies-literature

Phenotyping of Silique Morphology in Oilseed Rape Using Skeletonization with Hierarchical Segmentation.