Simon Leena L - OmicsDI

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Genomics (16)
Metabolomics (3)
Transcriptomics (1)

Organisms

Homo sapiens (16)
Mus musculus (1)

Repository

EGA (16)
MetaboLights (3)
biostudies-arrayexpress (1)

Technology Type

Mass spectrometry (3)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
HILIC_Pos_SYNAPT-G2_Waters (1)
HILIC_Neg_SYNAPT-G2_Waters (1)
RP_Neg_SYNAPT-G2_Waters (1)
RP_Pos_SYNAPT-G2_Waters (1)

Publication Date

2015 (1)
2025 (1)
2022 (1)
2019 (1)

CHEBI ID

CHEBI:16749 (2)
CHEBI:2632 (2)
CHEBI:17730 (2)
CHEBI:88639 (2)
CHEBI:31087 (2)
CHEBI:80612 (2)
CHEBI:89053 (2)
CHEBI:89195 (2)
CHEBI:89284 (2)
CHEBI:88817 (2)
CHEBI:62771 (2)
CHEBI:88585 (2)
CHEBI:89818 (2)
CHEBI:84505 (2)
CHEBI:174893 (2)
CHEBI:88728 (2)
CHEBI:29023 (2)
CHEBI:16577 (2)
CHEBI:35421 (2)
CHEBI:89920 (2)
CHEBI:75454 (2)
CHEBI:72959 (2)
CHEBI:88773 (2)
CHEBI:145278 (2)
CHEBI:131690 (2)
CHEBI:72747 (2)
CHEBI:28733 (2)
CHEBI:72998 (2)
CHEBI:131743 (2)
CHEBI:131692 (2)

Metabolite Name

2,3-Octanedione (2)
Acetyl-N-formyl-5-methoxykynurenamine (2)
Trans-Jasmone (2)
L-Cysteinylglycine disulfide (2)
25-Hydroxyvitamin D3-26,23-lactol (2)
3-Phenyl-1-propanol (2)
LysoPC(20:4(5Z,8Z,11Z,14Z)) (2)
LysoPC(22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (2)
LysoPC(18:2(9Z,12Z)) (2)
Ganglioside GM2 (d18:1/20:0) (1)
N-Retinylidene-N-retinylethanolamine (1)
8-[(6-carboxy-3,4,5-trihydroxyoxan-2-yl)oxy]-3-hydroxy-7-(4-hydroxy-3,5-dimethoxyphenyl)-12-(4-hydroxyphenyl)-6,11,13-trioxatetracyclo[7.4.1.0,.0,]tetradec1,3,5(14),6,8-pentaen-6-ylium (1)
{4-[(1E)-3-{2,3-dihydroxy-5-[hydroxy(3,4,5-trihydroxyoxan-2-yl)methyl]-4,6-dioxo-3-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]cyclohex-1-en-1-yl}-3-oxoprop-1-en-1-yl]phenyl}oxidanesulfonic acid (1)
Quercetin 3-(2''-glucosylgalactoside) 7-glucoside (1)
LysoPA(25:0/0:0) (1)
[4-({[3,5-dihydroxy-2-(hydroxymethyl)-6-(3,4,5-trihydroxybenzoyloxy)oxan-4-yl]oxy}carbonyl)-2,6-dihydroxyphenyl]oxidanesulfonic acid (1)
(24E)-3alpha-a,15alpha-Diacetoxy-23-oxo-7,9(11),24-lanostatrien-26-oic acid (1)
Ganglioside GD3 (d18:0/20:0) (1)
1,1'-(Tetrahydro-6hydroxy-2,3a,5-trimethylfuro[2,3-d]-1,3-dioxole-2,5-diyl)bis-ethanone (1)
Arsenobeta-aine (1)
Beta-onicine (1)
CL(8:0/8:0/12:0/18:2(9Z,11Z)) (1)
PA(13:0/18:2(9Z,11Z)) (1)
6-{[6-(2-carboxyethyl)-4-methoxy-2H-1,3-benzodioxol-5-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
6-[1-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)-3-oxopropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
Formononetin 7-(6''-methylmalonylglucoside) (1)
2-(2,5-dihydroxy-4-methoxyphenyl)-5,7-dihydroxy-6,8-bis[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]-4H-chromen-4-one (1)
6-{4-[6-carboxy-5-(2,6-dihydroxyphenyl)-3-methylcyclohex-3-en-1-yl]-3-hydroxyphenoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
Kaempferol 3-alpha-a-L-arabinofuranoside (1)
(S)-Nerolidol 3-O-[L-Rhamnopyranosyl-(1->4)-L-rhamnopyranosyl-(1->2)-[L-rhamnopyranosyl-(1->6)]-b-D-glucopyranoside] (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2015 (1)

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Hyperhomocysteinemia-related serum metabolome alterations not normalized by short-term folic acid treatment

Introduction

Hyperhomocysteinemia (HHCys) is an independent risk factor for various diseases such as cardiovascular diseases, Alzheimer's, and cancers. Folate deficiency is one of the significant reasons for HHCys. However, it is not known whether folate deficiency with HHCys is associated w...

2022-02-07 | MTBLS2150 | MetaboLights

EFO: In preparation - Early Metabolic Predictors of Type 2 Diabetes Mellitus in Normoglycemic Adults: Insights from Six-Year Prospective Cohort Study

INTRODUCTION: Type 2 Diabetes mellitus (T2DM) is a chronic metabolic disorder characterized by insulin resistance and hyperglycemia, often preceded by latent metabolic disruptions. Early detection of metabolic alterations can facilitate timely intervention to delay or prevent T2DM onset. Metaboli...

2025-08-04 | MTBLS10965 | MetaboLights

Postprandial Metabolism is Impaired in Overweight Normoglycemic Young Adults without Family History of Diabetes

While the risk factors for Type 2 diabetes (T2DM) are known, early predictive markers of transition from normal to a prediabetes state are unidentified. We studied the basal metabolism and metabolic response to a mixed-meal challenge in 110 healthy subjects in the age group of 18 to 40 years (Mal...

2019-03-14 | MTBLS743 | MetaboLights

mRNA sequencing of two brain regions (prefrontal cortex and hippocampus) and left myocardial tissue in mice with chronic heart failure vs. sham-operated control mice

After induction of ischemic chronic heart failure (CHF), mice exhibited depression-like behavior, in terms of increased anhedonia, and decreased both exploratory activity and interest in novelty. On histology, ischemic CHF mice showed no alterations in overall cerebral morphology. To further evaluat...

ORGANISM(S): Mus musculus

2015-02-20 | E-GEOD-55280 | biostudies-arrayexpress

GenomeEUtwin Data Access Committee

Access to data generated by the GenomeEUtwin is available by emailing application to the data access committee and will be granted to qualified investigators for appropriate use.

EGAC00000000007 | EGA

XXX

GenomeEUtwin control samples

EGAD00000000043 | EGA

Geographical structure and differential natural selection among North European populations

European populations and epidemiological cohorts are of special significance in the current era of genomic research aiming to characterize the background of common human diseases. The genome sequence, detailed information of genetic variations between individuals, high-throughput molecular technolog...

EGAS00000000033 | EGA

WTCCC2 Reading and Mathematics (RM) samples

A WTCCC2 project genome-wide association study for reading and mathematics ability in 3665 12-year-old individuals from the UK, genotyped on the Affymetrix 6.0 array. Details of the WTCCC2 analysis can be found in Davis et al. [Nat. Commun. 2014 July;5:4204]

EGAS00001000886 | EGA

Genome wide association scan in Parkinson's disease

Genome-wide association scan was performed in 1,705 cases of parkinson's genotyped on the Illumina Human 660W SNP array, and 5,175 controls genotyped on the Illumina1.2M-Duo. Analysis was carried out on the overlaps set of SNPs.

EGAS00000000034 | EGA

Pharmacogenomic response to Statins samples (Genotypes/Phenotypes)

EGAD00010000282 | EGA

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