Sims C C - OmicsDI

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Unknown (1014)
Proteomics (83)
Transcriptomics (69)
Metabolomics (62)
Genomics (22)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (68)
Mus musculus (27)
Saccharomyces cerevisiae (10)
Drosophila melanogaster (3)
Arachis hypogaea (1)
Macaca mulatta (1)
Daphnia magna (1)
Zea mays (1)
Caenorhabditis elegans (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Caulobacter sp. S3H41 (1)
Danio rerio (1)
Dineutus assimilis (1)
Dineutus ciliatus (1)
Dineutus discolor (1)
Dineutus hornii (1)
Dineutus nigrior (1)
Orectochilus villosus (1)
Passiflora edulis (1)
Penaeus (1)

Organisms

seawater metagenome (1)

Repository

biostudies-arrayexpress (76)
MassIVE (54)
GNPS (49)
pride (29)
EGA (14)
MetaboLights (13)
GPMDB (1)
LINCS (1)
ENA (1)

Tissue

Cell culture (3)
Fibroblast (2)
Blood (1)
Blood cell (1)
Blood plasma (1)
Bone marrow (1)
Brain (1)
Breast cancer cell (1)
C2C12 cell (1)
Callus culture (1)
Dopaminergic neuron (1)
Early embryonic cell (1)
HEK-293T cell (1)
Kidney (1)
Microglial cell (1)
Monocyte (1)
Muscle (1)
Muscle fibre (1)
Neutrophil (1)
Osteoblast (1)
Permanent cell line cell (1)
Plant cell (1)
Platelet (1)
Tail (1)
Testis (1)
Tibia (1)

Disease

Gray platelet syndrome (2)
Multiple sclerosis (1)
Not Available (1)
Breast cancer (1)
Disease free (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (12)
Mass spectrometry (11)
Bottom-up proteomics (9)
Illumina 15K (8)
Affinity purification coupled with mass spectrometry proteomics (4)
SWATH MS (4)
Mass spectrometry assay (2)
Fluorescence imaging (1)
Fluorescence intensity (1)
Data-dependent acquisition (1)
HDMSE (1)

Instrument Platform

LTQ Orbitrap Velos (47)
GC-MS (21)
GC MS (12)
LTQ Orbitrap (6)
AB SOLiD 4 System (3)
Q Exactive HF-X (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
Illumina Genome Analyzer IIx (1)
R (1)
Illumina HiSeq 2500 (1)
6110 Quadrupole LC/MS (1)
Agilent GC-MS (1)
LTQ FT (1)
LTQ Orbitrap Velos Pro (1)
MaXis (1)
Instrument (1)
Agilent GC/MSD 5975C (1)
Exactive (1)
LTQ Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive Plus (1)

Publication Date

2016 (60)
2015 (29)
2017 (19)
2023 (13)
2018 (13)
2014 (11)
2019 (10)
2012 (9)
2011 (9)
2024 (8)
2025 (7)
2013 (7)
2022 (6)
2026 (5)
2020 (3)
2010 (3)
2021 (3)
2007 (2)
2008 (1)
2006 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:64563 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:16027 (2)
CHEBI:16811 (2)
CHEBI:16856 (2)
CHEBI:173703 (2)
CHEBI:17858 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:29016 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64489 (2)
CHEBI:64525 (2)
CHEBI:73024 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:131440 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
PC(14:0/14:0) (2)
PC(16:1/16:1) (2)
PC(16:1/18:2) (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)

First Public Date

2022 (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (17)
ChIP-seq (5)
Unknown experiment type (3)
RIP-seq (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (105)
2021 (104)
2022 (96)
2020 (90)
2024 (86)
2025 (85)
2019 (71)
2018 (63)
2016 (60)
2015 (59)
2013 (43)
2017 (40)
2014 (39)
2012 (38)
2011 (30)
2010 (18)
2026 (18)
2008 (12)
2009 (12)
2007 (5)
2006 (5)
2005 (4)
2003 (3)
2004 (2)
1998 (1)

Lab affiliation

The University of Melbourne (7)
Faculty of Life Science, University of Manchester, United Kingdom (4)
Applied Bioinformatics of Cancer University of Edinburgh Cancer Research Centre Institute of Genetics and Molecular Medicine Edinburgh, United Kingdom (1)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Center for Translational & Computational Neuroimmunology Department of Neurology 622 West 168th street New York, NY 10032 (1)
Centre for Tumour Biology, Barts Cancer Institute, Queen Mary University of London, London, UK (1)
Columbia University Irving Medical Center (1)
Cornell University (1)
Department of Molecular & Medical Genetics, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA (1)
Department of Molecular Cell Biology, Leiden University Medical Center, Leiden, the Netherlands. (1)
Head of Biochemistry Centre for Proteome Research G44, Biosciences Building| Institute of Integrative Biology University of Liverpool Crown Street Liverpool L69 7ZB (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 www.isas.de (1)
Molecular Allergy Research Laboratory, Centre for Sustainable Tropical Fisheries and Aquaculture (CSTFA), College of Science and Engineering, James Cook University, Douglas, QLD 4811, Australia Tropical Futures Institute, James Cook University, 149 Sims Drive, Singapore 387380, Singapore (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
Structural Studies Division MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (1)
SynthSys University of Edinburgh (1)
The Institute of Cancer Research, London (1)
The Univeristy of Melbourne (1)
University of Oxford, Discovery Proteomics Facility, Target Discovery Institute (1)

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Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial C - blue mussel ensilage-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial C, alternative processi...

2023-06-13 | MTBLS4384 | MetaboLights

SIMS seawater associate bacteria

SIMS seawater associate bacteria Raw sequence reads

PRJNA846510 | ENA

Mutation of ZMYM2 SIMs

The interaction between SUMO and ZMYM2 is mediated through specific motifs found in ZMYM2 that are called SIMs (SUMO interacting motifs). We found/characterised three SIMs in ZMYM2 and in vitro experiments showed that mutation in these residues prevent the interaction with SUMO. Microarray transcrip...

ORGANISM(S): Homo sapiens

2015-08-06 | E-MEXP-3880 | biostudies-arrayexpress

Nanoscale electrochemical response of lithium-ion cathodes: a combined study using C-AFM and SIMS.

Not available

S-EPMC6009439 | biostudies-literature

The C-Terminal Domain of RNA Polymerase II is Modified by Site-Specific Methylation

The Carboxy-terminal domain (CTD) of RNA Polymerase II (RNAPII) in mammals undergoes extensive post-translational modification, which is essential for transcriptional initiation and elongation. Here, we show that the CTD of RNAPII is methylated at a single arginine (R1810) by the transcriptional co-...

ORGANISM(S): Homo sapiens

2011-04-01 | E-GEOD-27315 | biostudies-arrayexpress

Experience of an information aid for newly diagnosed multiple sclerosis patients: a qualitative study on the SIMS-Trial.

Not available

S-EPMC5060699 | biostudies-literature

Hierarchical Sulfide-Rich Modification Layer on SiO/C Anode for Low-Temperature Li-Ion Batteries.

Not available

S-EPMC9284185 | biostudies-literature

Expanding the Efficacy of Fingermark Enhancement Using ToF-SIMS.

Not available

S-EPMC10419545 | biostudies-literature

Chemical Evaluation of Eumelanin Maturation by ToF-SIMS and Alkaline Peroxide Oxidation HPLC Analysis.