Sims D D - OmicsDI

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Unknown (862)
Transcriptomics (65)
Proteomics (65)
Metabolomics (60)
Genomics (21)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (61)
Mus musculus (18)
Saccharomyces cerevisiae (9)
Drosophila melanogaster (3)
Arachis hypogaea (1)
Macaca mulatta (1)
Daphnia magna (1)
Zea mays (1)
Caenorhabditis elegans (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Caulobacter sp. S3H41 (1)
Dineutus assimilis (1)
Dineutus ciliatus (1)
Dineutus discolor (1)
Dineutus hornii (1)
Dineutus nigrior (1)
Orectochilus villosus (1)
Passiflora edulis (1)

Repository

biostudies-arrayexpress (72)
MassIVE (51)
GNPS (49)
EGA (14)
pride (14)
MetaboLights (11)
GPMDB (1)
LINCS (1)

Tissue

Blood (1)
Blood cell (1)
Blood plasma (1)
Brain (1)
Callus culture (1)
Cell culture (1)
Dopaminergic neuron (1)
Early embryonic cell (1)
Epithelial cell (1)
Kidney (1)
Leukocyte (1)
Monocyte (1)
Neutrophil (1)
Plant cell (1)
Platelet (1)
Testis (1)
Whole body (1)

Disease

Gray platelet syndrome (2)
Multiple sclerosis (1)
Not Available (1)
Disease free (1)
Ovarian serous carcinoma (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (14)
Mass spectrometry (9)
Shotgun proteomics (9)
Illumina 15K (8)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
SWATH MS (2)
Fluorescence imaging (1)
Fluorescence intensity (1)
Affinity purification coupled with mass spectrometry proteomics (1)
HDMSE (1)

Instrument Platform

LTQ Orbitrap Velos (46)
GC-MS (21)
GC MS (12)
LTQ Orbitrap (6)
Liquid Chromatography MS - positive - reverse phase (6)
AB SOLiD 4 System (3)
Q Exactive HF-X (3)
Illumina HiSeq 2000 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
Liquid Chromatography MS - negative - hilic (2)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
6110 Quadrupole LC/MS (1)
Agilent GC-MS (1)
LTQ FT (1)
LTQ Orbitrap Velos Pro (1)
MaXis (1)
Instrument (1)
Agilent GC/MSD 5975C (1)
Exactive (1)
LTQ Velos (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive Plus (1)
ZenoTOF 7600 (1)
Direct infusion MS - positive - - Ditect Injection MS (1)
Gas Chromatography MS (1)
Liquid Chromatography MS (Negative) (1)
Liquid Chromatography MS (Positive) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)

Publication Date

2016 (58)
2015 (28)
2017 (18)
2023 (14)
2018 (12)
2014 (10)
2011 (10)
2019 (9)
2012 (8)
2013 (6)
2024 (6)
2022 (4)
2020 (3)
2010 (3)
2007 (2)
2021 (2)
2008 (1)
2006 (1)
2026 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:16027 (2)
CHEBI:16811 (2)
CHEBI:16856 (2)
CHEBI:173703 (2)
CHEBI:17858 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:29016 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64489 (2)
CHEBI:64563 (2)
CHEBI:73024 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:131739 (1)
CHEBI:131740 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (13)
ChIP-seq (5)
Unknown experiment type (3)
ChIP-chip by tiling array (2)
RIP-seq (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (83)
2021 (82)
2023 (79)
2022 (78)
2024 (71)
2019 (66)
2020 (65)
2016 (64)
2015 (56)
2014 (40)
2018 (40)
2013 (35)
2011 (32)
2017 (31)
2012 (30)
2010 (20)
2026 (16)
2009 (12)
2008 (9)
2007 (8)
2006 (8)
2003 (2)
2001 (2)
2000 (2)
2004 (1)
2002 (1)

Lab affiliation

Faculty of Life Science, University of Manchester, United Kingdom (4)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Columbia University Irving Medical Center (1)
Cornell University (1)
Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas (1)
Dynamic Omics, Antibody Discovery and Protein Engineering (ADPE), R&D AstraZenecaGaithersburg, Maryland, US, 20878. (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 www.isas.de (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
Structural Studies Division MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (1)
University of Oxford, Discovery Proteomics Facility, Target Discovery Institute (1)

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Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights

Vitamin D status in Kancheepuram District, Tamil Nadu, India.

Not available

S-EPMC6280507 | biostudies-literature

Mutation of ZMYM2 SIMs

The interaction between SUMO and ZMYM2 is mediated through specific motifs found in ZMYM2 that are called SIMs (SUMO interacting motifs). We found/characterised three SIMs in ZMYM2 and in vitro experiments showed that mutation in these residues prevent the interaction with SUMO. Microarray transcrip...

ORGANISM(S): Homo sapiens

2015-08-06 | E-MEXP-3880 | biostudies-arrayexpress

Evalutation of the effect of ethanol upon gene expression in adult Drosophila melanogaster

This experiment was intended to determine if topical exposure to ethanol led to significant changes in gene expression in adult Drosophila melanogaster. It was determined that topical exposure to ethanol did not lead to a strong differential expression of genes in Drosophila after 4 hours. The eff...

ORGANISM(S): Drosophila melanogaster

2010-06-11 | E-GEOD-3033 | biostudies-arrayexpress

Gliotransmission of D-serine promotes thirst-directed behaviors in Drosophila.

Not available

S-EPMC9616736 | biostudies-literature

Discovery of Potential Anti-Microbial Molecules and Spectrum Correlation Effect of Ardisia crenata Sims via High-Performance Liquid Chromatography Fingerprints and Molecular Docking.

Not available

S-EPMC10934372 | biostudies-literature

D-Dimer and Fibrin Degradation Products Impair Platelet Signaling: Plasma D-Dimer Is a Predictor and Mediator of Platelet Dysfunction During Trauma.

Not available

S-EPMC7648734 | biostudies-literature

Identification of Lithium Compounds on Surfaces of Lithium Metal Anode with Machine-Learning-Assisted Analysis of ToF-SIMS Spectra.