Singh K K - OmicsDI

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Unknown (8900)
Proteomics (205)
Transcriptomics (119)
Genomics (44)
Metabolomics (27)
Models (3)
Genomic (3)
Multiomics (1)

Organisms

Homo sapiens (163)
Mus musculus (77)
Rattus norvegicus (7)
Mycobacterium tuberculosis H37Rv (7)
Caenorhabditis elegans (4)
Arabidopsis thaliana (4)
Entamoeba histolytica (3)
Oryza sativa (3)
Mycobacterium tuberculosis (3)
Triticum aestivum (2)
Candida albicans (2)
Solanum lycopersicum (2)
Saccharomyces cerevisiae (2)
Leishmania (1)
Elaeis guineensis (1)
Boechera stricta (1)
Methanococcus maripaludis S2 (1)
Coffea arabica (1)
Papaver somniferum (1)
Staphylococcus aureus subsp. aureus COL (1)
Synechocystis sp. PCC 6803 (1)
Gossypium hirsutum (1)
Haloferax volcanii (1)
Oryza sativa Indica Group (1)
Macaca fascicularis (1)
Zea mays (1)
Populus trichocarpa (1)
Oryza sativa Japonica Group (1)
Escherichia coli (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Escherichia coli (2)
Haloferax volcanii (1)
Homo sapiens (1)

Repository

pride (178)
biostudies-arrayexpress (130)
EGA (24)
MetaboLights (23)
MassIVE (18)
ENA (8)
GNPS (4)
dbGaP (3)
iProX (3)
PanoramaPublic (3)
Cell Collective (2)
BioModels (1)
geo (1)
jPOST (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (32)
Blood plasma (12)
Epithelial cell (9)
Heart (8)
Brain (7)
Retina (6)
Liver (5)
Lung (4)
Macrophage (4)
Permanent cell line cell (4)
Aortic valve (3)
Blood (3)
Blood serum (3)
Bone marrow (3)
Fibroblast (3)
Seedling (3)
Stem cell (3)
Bone (2)
Cell lysate (2)
Embryonic stem cell (2)
Leaf (2)
Midgut (2)
Nasal lavage fluid (2)
Pancreas (2)
Primary cell (2)
Skeletal muscle (2)
Spermatozoon (2)
Spleen (2)
Urine (2)
HEK-293 cell (1)

Disease

COVID-19 (6)
Disease free (5)
Tuberculosis (4)
Breast cancer (3)
Cardiovascular system disease (3)
Plasmodium falciparum malaria (3)
Atherosclerosis (2)
Myocardial ischemia (2)
Osteosarcoma (2)
Parkinson's disease (2)
Retinopathy of prematurity (2)
Leishmaniasis (1)
Pancreatic tumor (1)
Abdominal aortic aneurysm (1)
Amyotrophic lateral sclerosis type 21 (1)
Aortic valve (1)
Aortic valve stenosis (1)
Bacterial gastritis (1)
Bacterial infectious disease (1)
Beta thalassemia (1)
Bone osteosarcoma (1)
Cancer (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Colitis (1)
Endometrial adenocarcinoma (1)
Glioblastoma (1)
Graft-versus-host disease (1)
Heart failure (1)
Human immunodeficiency virus infectious disease (1)

Technology Type

Mass Spectrometry (178)
Shotgun proteomics (94)
Bottom-up proteomics (46)
Data-dependent acquisition (23)
Affinity purification coupled with mass spectrometry proteomics (19)
Mass spectrometry (18)
Data-independent acquisition (11)
Top-down proteomics (8)
SWATH MS (7)
Gel-based experiment (5)
SRM/MRM (5)
NMR spectroscopy (4)
AB SOLiD 4 System (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

Q Exactive (7)
Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (5)
Q Exactive Plus (4)
Illumina HiSeq 2000 (3)
Orbitrap Fusion Lumos (3)
Q Exactive HF (3)
Liquid Chromatography MS - positive - hilic (3)
Nuclear Magnetic Resonance (NMR) - (3)
Illumina iScan (2)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2500 (2)
Synapt XS (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Illumina Hybridisation Oven (1)
ScanArray 4000 [PerkinElmer] (1)
ScanArray 5000 [PerkinElmer] (1)
Illumina MiSeq (1)
6550 iFunnel Q-TOF LC/MS (1)
TSQ Quantis (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Nano-LC/MS/MS (1)
TripleTOF 5600 (1)
6550 Q-TOF LC-MS Agilent (1)
Bruker (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2021 (38)
2023 (34)
2025 (33)
2026 (28)
2022 (25)
2011 (24)
2019 (20)
2015 (19)
2013 (19)
2024 (19)
2020 (16)
2010 (16)
2014 (15)
2016 (12)
2012 (10)
2018 (9)
2017 (7)
2009 (6)
2005 (4)
2008 (2)
2007 (2)
2006 (2)

UNIPROT ID/AC

1148.1652882 (1)
1148.1653315 (1)
6PGD_SYNY3 (1)
6PGL_SYNY3 (1)
AAR_SYNY3 (1)
AAT_SYNY3 (1)
ACCA_SYNY3 (1)
ACCD_SYNY3 (1)
ACKA_SYNY3 (1)
ACNB_SYNY3 (1)
ACP_SYNY3 (1)
ACSA_SYNY3 (1)
ACSF1_SYNY3 (1)
AKR_SYNY3 (1)
ALDEC_SYNY3 (1)
ALF1_SYNY3 (1)
ALF2_SYNY3 (1)
AMID_SYNY3 (1)
AMPA_SYNY3 (1)
ANMK_SYNY3 (1)
APBC_SYNY3 (1)
APCB_SYNY3 (1)
APCD_SYNY3 (1)
APCE_SYNY3 (1)
APCF_SYNY3 (1)
APT_SYNY3 (1)
ARGB_SYNY3 (1)
ARGC_SYNY3 (1)
ARGD_SYNY3 (1)
ARGJ_SYNY3 (1)

CHEBI ID

CHEBI:16919 (14)
CHEBI:16708 (12)
CHEBI:15354 (11)
CHEBI:15891 (11)
CHEBI:16737 (11)
CHEBI:17368 (11)
CHEBI:17596 (11)
CHEBI:25094 (11)
CHEBI:27897 (11)
CHEBI:30769 (11)
CHEBI:32816 (11)
CHEBI:17154 (10)
CHEBI:17568 (10)
CHEBI:18237 (10)
CHEBI:28044 (10)
CHEBI:16335 (9)
CHEBI:16449 (9)
CHEBI:16704 (9)
CHEBI:16811 (9)
CHEBI:17126 (9)
CHEBI:17562 (9)
CHEBI:18186 (9)
CHEBI:24898 (9)
CHEBI:27266 (9)
CHEBI:28300 (9)
CHEBI:29016 (9)
CHEBI:15741 (8)
CHEBI:15746 (8)
CHEBI:15756 (8)
CHEBI:16235 (8)

Metabolite Name

Creatine (8)
Hypoxanthine (7)
Taurine (7)
Adenine (6)
Choline (6)
Creatinine (6)
Tryptophan (6)
Uracil (6)
Valine (6)
Azelaic acid (5)
Dodecanedioic acid (5)
Inosine (5)
Isoleucine (5)
Niacinamide (5)
Spermine (5)
Xanthine (5)
Adenosine (4)
Alanine (4)
Caffeine (4)
Cytidine (4)
Formate (4)
Glutamate (4)
L-Arginine (4)
L-Phenylalanine (4)
Leucine (4)
Lysine (4)
Oleic acid (4)
Phenylalanine (4)
Stearidonic acid (4)
Succinate (4)

First Public Date

2024 (4)
2020 (2)
2018 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (5)
Boston Children's Hospital (4)
Brigham and Women's Hospital (4)
King's College London (4)
Brigham and Women's Hospital, Harvard Medical School (3)
Center for Reproductive Evolution, Biology Department, Syracuse University (2)
Centre for Ocular Regeneration (CORE), Prof. Brien Holden Eye Research Centre (BHERC), L V Prasad Eye Institute, Hyderabad, Telangana, India (2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio (2)
King's College London British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, King's College London, London, UK. (2)
Max Planck Institute for the Science of Light & Max-Planck-Zentrum für Physik und Medizin Division Biological Optomechanics Staudtstr. 2 91058 Erlangen Germany (2)
The Center for Excellence in Vascular Biology, Cardiovascular Division The Center for Interdisciplinary Cardiovascular Sciences, Cardiovascular Division Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA (2)
Transcription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka, India (2)
*Dr. Arun Sharma Protein Biochemistry and Structural Biology Division National Institute of Malaria Research (ICMR) Department of Health Research, Ministry of Health and Family Welfare, Govt. of India Sector-8, Dwarka, New Delhi- 110077 (1)
, Dana-Farber Cancer Institute, Harvard Medical School 360 Longwood Avenue Longwood Center, LC4117 Boston, MA 02215 (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
1Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA. Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA (1)
1Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada 2 Snyder Institute for Chronic Diseases, Hotchkiss Brain Institute and McCaig Institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
2Collaborative Center for Translational Mass Spectrometry, Translational Genomics Research Institute, Phoenix, AZ, USA (1)
Additional Professor, Deptt. of Medical Oncology (Lab), Dr BRAIRCH, AIIMS, New Delhi (1)
All India Institute of Medical Sciences, New Delhi, India (1)
Assistant Professor Ramalingaswami Fellow Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Faridabad - Gurgaon Expressway PO box # 04 FARIDABAD 121001, India (1)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Associate Professor; Director of the Molecular and Applied Sciences Laboratory and Applied Physiology Laboratory (1)
BRIGHAM AND WOMEN'S HOSPITAL, HARVARD MEDICAL SCHOOL (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Sciences Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY (1)
Beckman Research Institute of City of Hope (1)
Beckman Research Institute of the City of Hope (1)
Biophysics Lab, Division of Biochemistry, ICAR-IVRI, Izatnagar, Uttar Pradesh, INDIA. (1)
Brigham and Women's Hopsital Harvard Medical School (1)
Bristol Myers Squibb (1)

IsPrivate

False (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (75)
RNA-seq of coding RNA (20)
ChIP-seq (10)
Methylation profiling by array (9)
ChIP-chip by tiling array (3)
Other (3)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by SNP array (1)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
CLIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1188)
2021 (1056)
2023 (1053)
2025 (1031)
2024 (927)
2020 (703)
2019 (533)
2018 (495)
2017 (369)
2016 (333)
2015 (272)
2014 (225)
2013 (177)
2012 (160)
2026 (149)
2011 (105)
2010 (92)
2009 (55)
2008 (36)
2006 (21)
2007 (17)
2005 (13)
2004 (5)
2003 (4)
2001 (3)
2002 (2)
2000 (2)
1999 (2)
1998 (1)

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A gene expression signature associated with K-Ras addiction reveals regulators of EMT and tumor cell survival

K-Ras mutations occur frequently in epithelial cancers. Using shRNAs to deplete K-Ras in lung and pancreatic cancer cell lines harboring K-Ras mutations, two classes were identified—lines that do or do not require K-Ras to maintain viability. Comparing these two classes of cancer cells revealed a g...

ORGANISM(S): Homo sapiens

2009-03-06 | E-GEOD-15126 | biostudies-arrayexpress

Gene expression analysis of rice seedling under potassium deprivation

Potassium is one of the essential macronutrients required for plant growth and development. It plays a major role in different physiological processes like cell elongation, stomatal movement, turgor regulation, osmotic adjustment, and signal transduction by acting as a major osmolyte and component o...

ORGANISM(S): Oryza sativa Indica Group

2013-09-14 | E-GEOD-44250 | biostudies-arrayexpress

The modulation of erythrocyte Na(+)/K(+)-ATPase activity by curcumin.

Not available

S-EPMC4642195 | biostudies-literature

Triclinic modification of N-[(1,1-di-methyl-ethoxy)carbon-yl]-3-[(R)-prop-2-en-1-ylsulfin-yl]-(R)-alanine ethyl ester at 120 (1) K.

Not available

S-EPMC2969554 | biostudies-literature

Adsorption of K Ions on Single-Layer GeC for Potential Anode of K Ion Batteries.

Not available

S-EPMC8401946 | biostudies-literature

ChIP-seq of sigma 70 in wild-type and hns mutant Escherichia coli K-12 MG1655

We mapped the genome-wide binding of sigma 70 in E. coli K-12 MG1655 and an hns mutant that is otherwise isogenic using ChIP coupled with deep sequencing (ChIP-seq). We show that intragenic binding of sigma 70 is increased in the hns mutant.

ORGANISM(S): Escherichia coli

2013-12-15 | E-MTAB-2148 | biostudies-arrayexpress

Simrank: Rapid and sensitive general-purpose k-mer search tool.

Not available

S-EPMC3097142 | biostudies-literature

On the extreme hydrologic events determinants by means of Beta-Singh-Maddala reparameterization.

Not available

S-EPMC9477834 | biostudies-literature

Exploring Kinnow mandarin's hidden potential: Nature's key to antimicrobial and antidiabetic gold nanoparticles (K-AuNPs).

Not available

S-EPMC10485157 | biostudies-literature

Fabrication of Europium-Doped Barium Titanate/Polystyrene Polymer Nanocomposites Using Ultrasonication-Assisted Method: Structural and Optical Properties.