Small Justin J - OmicsDI

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Transcriptomics (15)
Metabolomics (15)
Unknown (13)
Proteomics (9)
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Organisms

Homo sapiens (12)
Mus musculus (6)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (1)

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biostudies-arrayexpress (15)
MassIVE (9)
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pride (2)

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Mass spectrometry (8)
Mass Spectrometry (2)
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Q Exactive (7)
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2019 (8)
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CHEBI ID

CHEBI:15741 (2)
CHEBI:16335 (2)
CHEBI:16449 (2)
CHEBI:16610 (2)
CHEBI:17964 (2)
CHEBI:24462 (2)
CHEBI:25094 (2)
CHEBI:4170 (2)
CHEBI:6650 (2)
CHEBI:131430 (1)
CHEBI:131440 (1)
CHEBI:132009 (1)
CHEBI:132032 (1)
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CHEBI:132036 (1)
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CHEBI:132577 (1)
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CHEBI:132581 (1)
CHEBI:132582 (1)
CHEBI:132596 (1)
CHEBI:132597 (1)
CHEBI:132600 (1)
CHEBI:132601 (1)
CHEBI:132603 (1)

Metabolite Name

Adenosine (2)
Alanine (2)
Glutamic acid (2)
Lysine (2)
Phenylalanine (2)
Proline (2)
(2E)-decenoyl-ACP (1)
1-O-Sinapoyl-beta-D-glucose (1)
1-monopalmitoylglycerol (1)
1-piperidine carboxylic acid (1)
2,3-Dihydroxybenzoic acid (1)
2-Keto-L-gluconic acid (1)
2-furoic acid (1)
2-pyrrolidineacetic acid (1)
3-Aminopiperidine-2-one (1)
3-Mercaptopropionate (1)
3-acetamidobutanal (1)
3-hydroxybutanoic acid (1)
4-Aminobenzoic acid (1)
4-Hydroxybenzoic acid (1)
4-O-beta-D-Glucosyl-sinapate (1)
5-Hydroxyferulic acid (1)
5-Methylthioadenosine (1)
5-O-Feruloylquinic acid (1)
9,12-Octadecadienoic acid (1)
9-Chloro-11beta,17,21-trihydroxypregn-4-ene-3,20-dione 21-acetate (1)
Acetate (1)
Adenine (1)
Adenosine 5'-monophosphate (1)
Arabinose (1)

Study type

Transcription profiling by array (9)
Comparative genomic hybridization by array (2)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Other (1)
RNA-seq of coding RNA (1)

Release Date

2013 (4)
2019 (4)
2010 (3)
2018 (3)
2020 (2)
2015 (2)
2014 (2)
2012 (2)
2021 (2)
2011 (1)
2009 (1)
2008 (1)
2005 (1)

Lab affiliation

Department of Chemistry and Biomolecular Chemistry, University of Wisconsin, Wisconsin, USA (2)

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Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders

Small intestinal bacterial overgrowth (SIBO) has been implicated in symptoms associated with functional gastrointestinal disorders (FGIDs), though mechanisms remain poorly defined and treatment involves non-specific antibiotics. Here we show that SIBO based on duodenal aspirate culture reflects an o...

2019-04-30 | MTBLS876 | MetaboLights

A delicate balance in cellular signaling is required for plants to distinguish mutualist from parasitic organisms in its environment. Mitogen-activated protein kinase (MAPK) cascades are one of the signaling modules that mediate transduction of extracellular microbial signals into appropriate cellul...

2017-08-25 | MTBLS441 | MetaboLights

Transcription profiling of human cell lines freely cycling treated with 164 distinct small molecules - Broad Connectivity Map CMAP Set 1

A reference collection of genome-wide transcriptional expression data for bioactive small molecules. Experiment Overall Design: The current collection (build01) contains data for 164 distinct small molecules applied to freely cycling human cell lines, represented by 453 individual treatment and matc...

ORGANISM(S): Homo sapiens

2008-12-06 | E-GEOD-5258 | biostudies-arrayexpress

The effect of HO-1 overexpression on microRNA transcriptome in NCI-H292 lung cancer cells

The aim was to determine the effect of heme oxygenase-1 (HO-1) overexpression on microRNA transcriptome in human non-small cell lung carcinoma cell line (NCI-H292). Since the cells of different HO-1 genotypes were used (cells are after retroviral transduction with empty vector with normal level of H...

ORGANISM(S): Homo sapiens

2013-04-27 | E-GEOD-37779 | biostudies-arrayexpress

Interplay between heme oxygenase-1 and miR-378 affects non-small cell lung carcinoma growth, vascularization, and metastasis.

Not available

S-EPMC3740397 | biostudies-literature

DDA LC-MS/MS of reference human plasma and urine samples

Brief description of the data submitted: Three LC-MS/MS files acquired using Data Dependent Acquisition (DDA) for (1) NIST 1950 Frozen Human Plasma standard reference material subjected to reversed-phase chromatographic (RPC) metabolomic assay tailored for complex lipid separation; (2) plasma Long...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-11-04 | MSV000090642 | MassIVE

Overexpression of Brassica napus COMT1 in Arabidopsis heightens UV-B-mediated resistance to Plutella xylostella herbivory

UV-B radiation regulates numerous morphogenic, biochemical and physiological responses in plants, and can stimulate some responses typically associated with other abiotic and biotic stimuli, including invertebrate herbivory. Removal of UV-B from the growing environment of various plant species ha...

2023-08-14 | MTBLS8236 | MetaboLights

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids

Characterization of endogenous metabolites and xenobiotics is essential to deconvoluting the genetic and environmental causes of disease. However, surveillance of chemical exposure and disease-related changes in large cohorts requires an analytical platform that offers rapid measurement, high sensit...

2017-02-14 | MTBLS427 | MetaboLights

Proteomic Atlas of the Human Brain in Alzheimer’s Disease

Here we provide a proteomic resource comprising nine functionally distinct sections from three individuals clinically diagnosed with Alzheimer's disease, across a spectrum of disease progression. Using state-of-the-art mass spectrometry, we identify a core brain proteome that exhibits only small var...