Sort   by:  
 Page size 
MetabolomicsConnecting structure and function from organisms to molecules in small-animal symbioses through chemo-histo-tomography
Our understanding of metabolic interactions between small symbiotic animals and bacteria or parasitic eukaryotes that reside within their bodies is extremely limited. This gap in knowledge originates from a methodological challenge, namely to connect histological changes in host tissues induced by b...
2021-07-06 | MTBLS2639 | MetaboLights
MetabolomicsComputational Ranking of Yerba Mate Small Molecules Based on Their Predicted Contribution to Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus
The aqueous extract of yerba mate, a South American tea beverage made from Ilex paraguariensis leaves, has demonstrated bactericidal and inhibitory activity against bacterial pathogens, including methicillin-resistant Staphylococcus aureus (MRSA). The gas chromatography-mass spectrometry (GC-MS) ana...
2015-03-19 | MTBLS170 | MetaboLights
MetabolomicsRapid chromatography combined with trapped ion mobility mass spectrometry for analysis of derivatized small molecules
Liquid chromatography (LC) separates biomolecules based on their physicochemical properties. Reproducible retention times support compound identification, while efficient separation of structurally similar compounds is essential for accurate quantification. However, conventional LC methods are often...
2026-06-30 | MTBLS14813 | MetaboLights
GenomicsEV-sorting small RNA in normal human plasma-EV compared with EV-depleted plasma
EV-sorting small RNA in normal human plasma-EV compared with EV-depleted plasma
PRJNA1167218 | ENA
MetabolomicsStress-related mitogen-activated protein kinases stimulate the accumulation of small molecules and proteins in Arabidopsis thaliana root exudates
A delicate balance in cellular signaling is required for plants to distinguish mutualist from parasitic organisms in its environment. Mitogen-activated protein kinase (MAPK) cascades are one of the signaling modules that mediate transduction of extracellular microbial signals into appropriate cellul...
2017-08-25 | MTBLS441 | MetaboLights
TranscriptomicsNext generation sequencing identifies small RNA expression in FLT3-ITD+ AML (MV4-11) cell lines
The expression level of microRNAs in FLT3-ITD+ AML is unknown. Using empty vector (EV) lentiviral CRISPR-Cas9 infected FLT3-ITD+ AML cell lines (MV4-11 cells), we performed next generation RNA sequencing on small RNAs to determine microRNA expression level in these cells. We found a variety of evolu...
ORGANISM(S): Homo sapiens 
2016-07-01 | E-GEOD-71543 | biostudies-arrayexpress
GenomicsSmall RNA Seq of MEC-1 EV
Small RNA Sequencing of MEC-1 derived extracellular vesicles (EV) and cells
PRJEB6780 | ENA
TranscriptomicsEV-sorting small RNA in normal human plasma-EV compared with EV-depleted plasma
After mapping to transcriptome using bowtie2 and peak calling by RNA peak caller (cfPeak), count matrix was created by merge 3 pairs of samples. EV-sorting small RNA sites in normal human plasma total RNA-seq were annotated by comparing differentially expressed peaks (EV vs. EV-depleted Plasma).
ORGANISM(S): Homo sapiens 
2025-05-09 | GSE278414 | GEO
TranscriptomicsGenome-wide analysis of siRNA accumulation in Arabidopsis treated with bacteria
To identify endogenous siRNAs in response to bacterial pathogen at a whole genome level, we performed small RNA profiling on Pseudomonas syringae-challenged Arabidopsis and obtained more than 24.6 million (M) reads with more than 3.8 M unique small RNAs that perfectly matched Arabidopsis genome. We ...
ORGANISM(S): Arabidopsis thaliana 
2010-07-23 | E-GEOD-19694 | biostudies-arrayexpress
Genomicssmall RNA profiling of extracellular RNA from breast cancer cell lines [EV]
small RNA profiling of extracellular RNA from breast cancer cell lines [EV]
PRJNA471078 | ENA
Sort   by:  
 Page size