Small open reading frame

Show results for

Unknown (518)
Transcriptomics (342)
Proteomics (161)
Genomics (108)
Multiomics (51)
Other (5)
Metabolomics (2)

Organisms

Homo sapiens (155)
Saccharomyces cerevisiae (60)
Mus musculus (45)
Escherichia coli (10)
Tetrahymena thermophila (7)
Drosophila melanogaster (7)
Arabidopsis thaliana (7)
Danio rerio (6)
Candida albicans (5)
Penicillium chrysogenum (4)
Photobacterium profundum (4)
Chlorocebus sabaeus (4)
Trypanosoma brucei (4)
Staphylococcus aureus (4)
Streptococcus pneumoniae (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Listeria monocytogenes (4)
Caldicellulosiruptor saccharolyticus (3)
Salmonella enterica (3)
Mycobacterium tuberculosis (3)
Rhodobacter capsulatus (2)
Brucella melitensis (2)
Metallosphaera sedula (2)
Lactococcus lactis (2)
Thermus thermophilus HB8 (2)
Haemophilus influenzae (2)
Bordetella bronchiseptica (2)
Porphyromonas gingivalis (2)
Schizosaccharomyces pombe (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)

Organisms

Homo sapiens (8)
Mus musculus (4)
Saccharomyces cerevisiae (3)
Brucella melitensis bv. 1 str. 16M (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (2)
Escherichia coli (2)
Inopus flavus (1)
Epinephelus tauvina (1)
Hepatitis delta virus (1)
Comamonas sediminis (1)
Callithrix jacchus (1)
Staphylococcus epidermidis (1)
Pseudomonas aeruginosa (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (347)
ENA (60)
pride (49)
PeptideAtlas (48)
EGA (32)
MassIVE (25)
geo (22)
iProX (20)
jPOST (7)
PanoramaPublic (4)
PAXDB (3)
MetaboLights (2)

Tissue

Others (20)
Cell culture (9)
Female Reproductive System (5)
Liver (5)
Heart (4)
Male Reproductive System (4)
Lung (3)
Kidney (3)
HUVEC cell (3)
Permanent cell line cell (3)
B cell (3)
Pancreas (2)
Endothelium (2)
Heart (2)
Cell suspension culture (2)
Spleen (2)
Liver (2)
Adrenal Gland (1)
Digestive System (1)
Sweat gland (1)
Carotid artery (1)
Secretion (1)
Telencephalon (1)
Hypothalamus (1)
Intestine (1)
Placenta (1)
JURKAT cell (1)
Cardiac muscle cell (1)
Blood serum (1)
Phloem (1)

Disease

HHV-6B infected (2)
Breast cancer (2)
Mock infection (1)
Larynxcarcinoma T4N2aM0 (1)
Normal (1)
Heart septal defect (1)
Brain glioblastoma multiforme (1)

Technology Type

Mass Spectrometry (49)
Shotgun proteomics (36)
Illumina HiSeq 2000 (16)
Affinity purification coupled with mass spectrometry proteomics (9)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (6)
Gel-based experiment (6)
Top-down proteomics (4)
Illumina HiSeq 2000, Illumina Genome Analyzer II (2)
Mass spectrometry (2)
Data-dependent acquisition (2)
Bottom-up proteomics (2)
Illumina HiSeq 2000, ILLUMINA (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Elite (28)
NextSeq 500 (10)
Illumina MiSeq (6)
Illumina HiSeq 2000 (6)
Q Exactive (6)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (5)
Q Exactive HF (5)
GenePix 4000B [Axon Instruments] (3)
GenePix 4000A [Axon Instruments] (2)
Spectronic Helios Alpha UV-Vis spectrophotometer (2)
Linux server, HPC cluster (1)
Not applicable in this study (1)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (1)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (1)
Liquid nitrogen freezer, surgical instruments (1)
Illumina Genome Analyser II (1)
NEB Next Ultra RNA Library Prep Kit for Illumina (1)
RNeasy kit (1)
Cell scraper (1)
Unspecified (1)
Ultracentrifuge (1)
NanoDrop (1)
Bellco roll-in incubator (1)
418 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)
NextSeq 550 (1)

Publication Date

2014 (84)
2010 (61)
2013 (40)
2011 (37)
2012 (26)
2009 (21)
2023 (20)
2021 (20)
2016 (20)
2025 (19)
2015 (18)
2026 (17)
2022 (17)
2024 (16)
2020 (15)
2008 (15)
2005 (15)
2007 (13)
2017 (11)
2019 (10)
2006 (9)
2018 (6)
2003 (4)
2004 (3)

UNIPROT ID/AC

A0QXZ5_MYCS2 (1)
A0QP78_MYCS2 (1)
A0R0V8_MYCS2 (1)
A0R178_MYCS2 (1)
A0QY12_MYCS2 (1)
RBFA_MYCS2 (1)
A0QQD1_MYCS2 (1)
A0QYE8_MYCS2 (1)
246196.MSMEI_0784 (1)
A0R2N4_MYCS2 (1)
A0QTL2_MYCS2 (1)
A0QZA6_MYCS2 (1)
A0QSZ7_MYCS2 (1)
PSA_MYCS2 (1)
A0QUH1_MYCS2 (1)
A0QPR6_MYCS2 (1)
A0QQX7_MYCS2 (1)
A0QT14_MYCS2 (1)
INHA_MYCS2 (1)
A0R4P4_MYCS2 (1)
A0QYV3_MYCS2 (1)
A0R1H3_MYCS2 (1)
A0QNZ9_MYCS2 (1)
A0R2D2_MYCS2 (1)
A0R5B0_MYCS2 (1)
A0QQD2_MYCS2 (1)
Y3950_MYCS2 (1)
A0R1R7_MYCS2 (1)
A0R237_MYCS2 (1)
A0QYE9_MYCS2 (1)

ENSEMBL ID

ENSG00000170477 (47)
ENSG00000229353 (31)
ENSG00000147251 (16)
ENSG00000247315 (12)
ENSG00000204131 (8)
ENSG00000214897 (3)
ENSG00000176092 (2)

CHEBI ID

CHEBI:83517 (1)
CHEBI:35331 (1)
CHEBI:8191 (1)
CHEBI:774944 (1)
CHEBI:119569 (1)
CHEBI:309829 (1)
CHEBI:444892 (1)
CHEBI:138738 (1)
CHEBI:83598 (1)
CHEBI:199024 (1)
CHEBI:167309 (1)
CHEBI:83779 (1)
CHEBI:83829 (1)
CHEBI:83645 (1)
CHEBI:127342 (1)
CHEBI:71241 (1)
CHEBI:41275 (1)
CHEBI:83394 (1)
CHEBI:83748 (1)
CHEBI:48965 (1)
CHEBI:2549 (1)
CHEBI:62527 (1)
CHEBI:36421 (1)
CHEBI:77397 (1)
CHEBI:50371 (1)
CHEBI:75331 (1)
CHEBI:64064 (1)
CHEBI:49402 (1)
CHEBI:81920 (1)
CHEBI:86990 (1)

Metabolite Name

Gallamine (1)
3-Phenoxybenzylalcohol (1)
O-Anisic acid (1)
2-Thiophenecarboxylic acid (1)
Benzophenone-3 (1)
(+-)-Baclofen (1)
Albuterol (1)
Kaempferol-3-O-glucoside (1)
Pyrazophos (1)
Phenanthridine (1)
Rhodopin (1)
Ethion (1)
Azinphos-methyl (1)
Thioinosinic acid (1)
Oxybutynine (1)
Xanthotoxin (1)
1-(3-Chlorophenyl)piperazine (1)
Trans-4-Hydroxy-3-methoxycinnamate (1)
D-2-Aminobutyric acid (1)
Iomeprol (1)
Prometryn (1)
Chloroxuron (1)
Casticin (1)
Metamitron (1)
Phytoene (1)
1-Benzylpiperazine (1)
Ioxitalamic acid (1)
Aminopyrine (1)
Delta-Tocotrienol (1)
Bupropion (1)

First Public Date

2025 (9)
2026 (8)
2022 (8)
2024 (7)
2023 (6)
2020 (5)
2014 (5)
2016 (3)
2019 (2)
2018 (2)
2015 (2)
2021 (1)
2017 (1)
2013 (1)

Classification

bacteria (7)
viruses (1)

Study type

Transcription profiling by array (181)
RNA-seq of coding RNA (54)
Unknown experiment type (23)
Other (13)
RNA-seq of non coding RNA (12)
Comparative genomic hybridization by array (9)
ChIP-seq (9)
ChIP-chip by tiling array (8)
Transcription profiling by tiling array (6)
ChIP-chip by array (5)
Ribo-seq (5)
DNA-seq (5)
Proteomic profiling by array (3)
High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
Transcription profiling by RT-PCR (2)
Plant - Two-color microarray (1)
Human - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2010 (75)
2014 (67)
2013 (62)
2011 (49)
2012 (44)
2016 (41)
2021 (40)
2015 (40)
2017 (38)
2023 (33)
2020 (33)
2025 (30)
2022 (29)
2009 (29)
2024 (28)
2008 (27)
2007 (26)
2019 (25)
2005 (24)
2018 (23)
2006 (16)
2003 (15)
1998 (13)
2004 (12)
2000 (12)
2026 (11)
1999 (8)
2002 (7)
2001 (4)
1997 (2)

Lab affiliation

Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (5)
School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (2)
VIB Midical Biotechnology Center, University of Gent, Belgium (2)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
Systematic Proteome Research & Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-Universität zu Kiel, Kiel, Germany (2)
Laboratory PRISM-Inserm U1192 university of lille France (1)
Department of Biological Chemistry, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Prabakaran lab, Department of Genetics, University of Cambridge, United Kingdom (1)
Chair, Department of Environmental and Global Health, College of Public Health and Health Professions, University of Florida (1)
Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany (1)
Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, Townsville, QLD, 4811, Australia (1)
Institut für Experimentelle Medizin (IEM) Arbeitsgruppe Systematische Proteomforschung Christian-Albrechts-Universität zu Kiel (1)
Zhao lab, Department of Applied Biology and Chemical Technology(ABCT) (1)
Department of Ecology, Environment and Evolution, School of Life Sciences, La Trobe University (1)
AG Proteomics & Bioanalytics - Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel 24105 Kiel, Germany (1)
Mikrobielle Proteomik, Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany (1)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (1)
Salk Institute for Biological Studies, Clayton Foundation Laboratories for Peptide Biology, 10010 North Torrey Pines Road, La Jolla, California 92037, United States (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, Melbourne, Australia (1)
Systematische Proteomics & Bioanalytik - Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel Niemannsweg 11 24105 Kiel, Germany (1)
Translational Proteomics Laboratory, Institut de recherches cliniques de Montréal (IRCM), Québec, Montréal, Canada. Département de biochimie et médecine moléculaire, Université de Montréal, Québec, Montréal, Canada. (1)
University of Liverpool, Centre for Proteome Research, Biosciences Building, Crown Street, Liverpool, UK (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Département de Biochimie, Université de Sherbrooke, Québec, Canada (1)
Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel Niemannsweg 11 24105 Kiel, Germany (1)
Systematische Proteomics & Bioanalytik, Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel 24105 Kiel, Germany (1)
Centre de Recherche sur le Cancer de l‘Université Laval,Oncology, Centre de Recherche du CHU de Québec-Université Laval, Canada, G1R 3S3 (1)
Department of Medical Biochemistry and Biophysics, Division of Molecular Metabolism, Karolinska Institutet, Biomedicum, 171 65 Solna, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm, Sweden (1)
Institute of Microbiology, University of Greifswald, 17489 Greifswald, Germany (1)
Department of Chemistry Chemical Biology Institute (West Campus) Yale University (1)

Previous page
1 / 114
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 114
Next page

Sort by:

Relevance

Page size

Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides

Computational, genomic, and proteomic approaches have been used to discover nonannotated proteincoding small open reading frames (smORFs). Some novel smORFs have crucial biological roles in cells and organisms, which motivates the search for additional smORFs. Proteomic smORF discovery methods are a...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-06-26 | MSV000084014 | MassIVE

Transcription profiling by array of post-mortem brain cortex from healthy control patients and amyotrophic lateral sclerosis patients that carry an expanded GGGGCC repeat mutation in the chromosome 9 open reading frame 72 (C9ORF72) gene

The purpose of this experiment was to compare differences in the transcript level between RNA samples collected from post-mortem motor cortex from healthy control patients and amyotrophic lateral sclerosis (ALS) patients that carry an expanded GGGGCC repeat mutation in the chromosome 9 open reading ...

ORGANISM(S): Homo sapiens

2013-10-29 | E-MTAB-1925 | biostudies-arrayexpress

Genome-wide analysis of cellular NMD substrates that regulated by Upf1, PNRC2 or CTIF in HeLa cell

The first round of translation occurs on mRNAs bound by nuclear cap-binding complex (CBC), which is composed of nuclear cap-binding protein (CBP) 80 and 20. During this round of translation, aberrant mRNAs are recognized and downregulated in abundance by nonsense-mediated mRNA decay (NMD), which is ...

ORGANISM(S): Homo sapiens

2012-07-22 | E-GEOD-37538 | biostudies-arrayexpress

Identification of small open reading frame encoded peptides of Thermosynechococcus vestitus BP-1(2133)

ORGANISM(S): Thermosynechococcus Elongatus Bp-1

2025-01-09 | PXD059620 |

Identification of small open reading frame encoded peptides of Picosynechococcus sp. PCC 7002 (7002)

ORGANISM(S): Synechococcus Sp. Pcc 7002

2025-01-10 | PXD059623 |

Identification of small open reading frame encoded peptides of Synechocystis sp. PCC 6803 (6803)

ORGANISM(S): Synechocystis Sp. Pcc 6803 Substr. Kazusa

2025-01-08 | PXD059576 |

Identification of small open reading frame encoded peptides of Nostoc sp. PCC 7120 (7120)

ORGANISM(S): Nostoc Sp. Pcc 7120 = Fachb-418

2025-01-09 | PXD059618 |

Identification of small open reading frame encoded peptides of Synechococcus elongatus PCC 7942 = FACHB-805

identification of small open reading frame encoded peptides of Synechococcus elongatus PCC 7942 = FACHB-805

ORGANISM(S): Synechococcus Elongatus Pcc 7942 = Fachb-805

2025-01-08 | PXD059575 |

identification of small open reading frame encoded peptides of several cyanobacteria (2133, 6803, 7002, 7120, 7942)

Identification of small open reading frame encoded peptides of several cyanobacteria (2133, 6803, 7002, 7120, 7942)

ORGANISM(S): Thermosynechococcus Elongatus Bp-1 Synechocystis Sp. Pcc 6803 Substr. Kazusa Synechococcus Sp. Pcc 7002 Synechococcus Elongatus Pcc 7942 = Fachb-805 Nostoc Sp. Pcc 7120 = Fachb-418

2025-02-05 | PXD060504 |

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq

We present a genome-wide assessment of small open reading frames (smORF) translation by ribosomal profiling of polysomal fractions in Drosophila S2 cell. In this way, mRNAs bound by multiple ribosomes and hence actively translated can be isolated and distinguished from mRNAs bound by sporadic, putat...

ORGANISM(S): Drosophila melanogaster

2014-09-11 | E-GEOD-60384 | biostudies-arrayexpress

Previous page
1 / 114
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 114
Next page

Sort by:

Relevance

Page size

1137 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets