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TranscriptomicsMultiple insert size paired-end sequencing for deconvolution of complex transcriptomes
Deep sequencing of transcriptomes allows quantitative and qualitative analysis of many RNA species in a sample, with parallel comparison of expression levels, splicing variants, natural antisense transcripts, RNA editing and transcriptional start and stop sites the ideal goal. By computational model...
ORGANISM(S): Caenorhabditis elegans 
2012-08-31 | E-GEOD-40507 | biostudies-arrayexpress
UnknownChildren And The Opioid Epidemic: Age-Stratified Exposures And Harms.
Not available
S-EPMC8157201 | biostudies-literature
TranscriptomicsTransposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata [RNA-Seq]
Transposable elements (TEs) are often the primary determinant of genome size differences among eukaryotes. In plants, the proliferation of TEs is countered through epigenetic silencing mechanisms that prevent transposition. Recent studies using the model plant Arabidopsis thaliana have revealed that...
ORGANISM(S): Arabidopsis lyrata 
2011-02-11 | E-GEOD-24571 | biostudies-arrayexpress
MetabolomicsFecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights
TranscriptomicsNatural variation in Arabidopsis thaliana transcriptomes
A major effort is underway to study the natural variation within the model plant species, Arabidopsis thaliana. Much of this effort is focused on genome resequencing, however the translation of genotype to phenotype will be largely effected through variations within the transcriptomes at the sequen...
ORGANISM(S): Arabidopsis thaliana 
2012-05-21 | E-GEOD-38109 | biostudies-arrayexpress
UnknownActivation of the STAT3 signaling pathway is associated with poor survival in diffuse large B-cell lymphoma treated with R-CHOP.
Not available
S-EPMC3871513 | biostudies-literature
TranscriptomicsMIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana: Illumina sequencing
Deep sequencing of small RNA from three closely related brassicaceae A. thaliana, A. lyrata and Capsella rubella was done to systematically analyze the evolution of MIRNA genes and their targets. Small RNA were extracted from total RNA by size fractionation and converted to DNA amplicons by serial a...
ORGANISM(S): Arabidopsis lyrata 
2010-05-14 | E-GEOD-20660 | biostudies-arrayexpress
TranscriptomicsHomology-guided Assembly of the Genomes of the Four Diverse Accessions Ler, C24, Bur-0 and Kro-0
Here we present the first whole-genome assemblies of Arabidopsis thaliana strains since the release of the 125 Mb reference genome sequence a decade ago. We demonstrate their practical relevance in studying the expression differences of polymorphic genes and show how the analysis of sRNA sequencing ...
ORGANISM(S): Arabidopsis thaliana 
2011-02-11 | E-GEOD-24569 | biostudies-arrayexpress
UnknownRisk, Protective, and Associated Factors of Anxiety and Depressive Symptoms and Campus Health Services Utilization Among Black Men on a College Campus.
Not available
S-EPMC8423855 | biostudies-literature
ProteomicsBayesian proteoform modeling improves protein quantification of global proteomic measurements
Data used for the implementation of a Bayesian Proteoform Quantification model (BP-Quant) that uses statistically derived peptide signatures to identify peptides that are outside the dominant pattern, or the existence of multiple over-expressed patterns to improve relative protein abundance estimate...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2021-06-24 | MSV000087701 | MassIVE
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