Smith Steve S - OmicsDI

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Unknown (26)
Genomics (14)
Transcriptomics (11)
Proteomics (3)
Metabolomics (1)

Organisms

Homo sapiens (21)
Arabidopsis thaliana (3)
Mus musculus (2)
Orthopoxvirus vaccinia (1)
Vaccinia virus Western Reserve (1)

Organisms

Arabidopsis thaliana (1)

Repository

EGA (13)
biostudies-arrayexpress (10)
pride (3)
geo (1)
MetaboLights (1)
ENA (1)

Tissue

Cell culture (2)
Endothelial cell (1)
Fibroblast (1)

Disease

Cardiovascular system disease (1)

Technology Type

Illumina 15K (8)
Mass Spectrometry (3)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Mass spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

ABI SOLiD v4 (1)
AB SOLiD 4 System (1)
Illumina HiSeq 2500 (1)
6520 Q-TOF LC/MS (Agilent) (1)

Publication Date

2010 (3)
2011 (2)
2024 (1)
2013 (1)
2012 (1)
2008 (1)
2005 (1)
2007 (1)
2016 (1)
2026 (1)
2025 (1)
2019 (1)

Metabolite Name

(+)-.alpha.-tocopherol (1)
(+)-catechin (1)
(+)-isocorydine (1)
(-)-.alpha.-kainic acid (1)
(-)-epigallocatechin (1)
(-)-myrtenol (1)
(2e,4e)-hexa-2,4-dienoic acid (1)
(2e,4e,12z)-n-(2-methylpropyl)octadeca-2,4,12-trienamide (1)
(3.beta.,5.alpha.)-4,4-dimethylcholesta-8,14,24-trien-3-ol (1)
(4r)-4-((1r,3s,5s,7r,9s,10s,12s,13r,14s,17r)-1,3,7,12-tetrahydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(r)-butyrylcarnitine (1)
(s)-cotinine n-oxide (1)
.alpha.-L-Glu-L-Tyr (1)
.alpha.-ionone (1)
.beta.-muricholic acid (1)
.beta.-nicotinamide adenine dinucleotide, reduced(NADH) (1)
.beta.-sitosterol (1)
.beta.-thujaplicin (1)
.delta.-dodecalactone (1)
.gamma.-aminobutyric acid (1)
.gamma.-l-glu-.epsilon.-l-lys (1)
.omega.-3 arachidonic acid (1)
1,2-di-(9z,12z,15z-octadecatrienoyl)-sn-glycero-3-phosphocholine (1)
1,2-dilinolenoyl-sn-glycero-3-phosphoethanolamine (1)
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (1)
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-n,n-dimethyl (1)
1,2-dioleoyl-sn-glycerol (1)
1,2-dipalmitoleoyl-sn-glycero-3-phosphocholine (1)
1,2-dipentadecanoyl-sn-glycero-3-phosphoethanolamine (1)
1,5-pentanediamine (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (2)
ChIP-chip by array (1)

Release Date

2024 (6)
2023 (6)
2022 (6)
2010 (3)
2021 (3)
2011 (2)
2025 (2)
2019 (2)
2013 (1)
2012 (1)
2008 (1)
2005 (1)
2018 (1)
2016 (1)

Lab affiliation

Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Indiana University School of Medicine (1)
Newcastle Univeristy (1)

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Transcription profiling of Arabidopsis carbohydrate metabolism through the diurnal cycle

This proposal is aimed at providing transcriptome data to underpin a long-term joint research programme of Steve Smith and Alison Smith. We are jointly studying starch synthesis and breakdown in Arabidopsis leaves, and individually studying other enzymes of carbohydrate metabolism (eg. sucrose synth...

ORGANISM(S): Arabidopsis thaliana

2008-06-14 | E-GEOD-6174 | biostudies-arrayexpress

Transcription profiling of Arabidopsis through the diurnal cycle, time series

ORGANISM(S): Arabidopsis thaliana

2005-02-16 | E-NASC-49 | biostudies-arrayexpress

Gene expression and carbohydrate metabolism through the diurnal cycle

ORGANISM(S): Arabidopsis thaliana

2007-01-22 | GSE6174 | GEO

The Relationship between Virus Replication and Host Gene Expression in Lymphatic Tissue during HIV-1 Infection

During HIV-1 infection, there is a massive perturbation of host gene expression, but as yet, genome-wide studies have not identified host genes affecting HIV-1 replication in lymphatic tissue, the primary site of virus-host interactions. In this study, we isolated RNA from the inguinal lymph nodes ...

ORGANISM(S): Homo sapiens

2010-06-08 | E-GEOD-21589 | biostudies-arrayexpress

Specific and off-target immune responses following COVID-19 vaccination with ChAdOx1-S and BNT162b2 vaccines-an exploratory sub-study of the BRACE trial.

Not available

S-EPMC11058726 | biostudies-literature

Oncolytic virus-driven immune remodeling revealed in mouse medulloblastomas at single cell resolution.

Not available

S-EPMC10424001 | biostudies-literature

Assessing the causal role of epigenetic clocks in the development of multiple cancers: a Mendelian randomization study.

Not available

S-EPMC9049976 | biostudies-literature

Genome-wide association studies of brain imaging phenotypes in UK Biobank.