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TranscriptomicsComparison of primary neuroblastoma tumors and derivative early-passage cell lines using genome-wide SNP array analysis
Stromal contamination is one of the major confounding factors in the analysis of primary solid tumor samples by single nucleotide polymorphism (SNP) arrays. As we propose to employ genome-wide SNP microarray analysis as a diagnostic platform for neuroblastoma, the sensitivity, specificity, and accur...
ORGANISM(S): Homo sapiens 
2009-01-31 | E-GEOD-14656 | biostudies-arrayexpress
ProteomicsRisk SNP rs11067228-mediated high-order chromatin interactions drive prostate cancer neuroendocrine differentiation through splicing factor SRRM4
Neuroendocrine prostate cancer is an aggressive disease characterized by early metastasis, drug resistance and poor prognosis. Genome-wide association studies (GWAS) previously identified numerous single nucleotide polymorphisms (SNPs) associated with prostate cancer. SNP rs11067228 as a significant...
ORGANISM(S): Homo sapiens (Human) 
2026-02-09 | PXD055628 | Pride
Snp rs11067228  enhancer  long-range chromatin interaction  neuroendocrine differentiation  prostate cancer 
GenomicsCandidatus Blochmannia sp. SNP
Candidatus Blochmannia sp. SNP Genome sequencing
PRJNA1062066 | ENA
TranscriptomicsGenome-wide SNP signal intensity scanning to find genes differentiating cows with ovarian pathologies from healthy cows
Ovarian cysts and ovarian hypoplasia are common ovarian pathologies in cattle. The development of these pathologies can be attributed to factors such as uterine infection, stress, milk production, age, reproductive time and inherited genetics. The most common detection procedures are via rectal palp...
ORGANISM(S): Bos taurus 
2017-08-22 | E-MTAB-4874 | biostudies-arrayexpress
TranscriptomicsAffymetrix SNP 6.0 array data from neuroendocrine primary tumor and its metastasis
Reports on common mutations in neuroendocrine tumors (NET) are rare and clonality of NET metastases has not been investigated in this tumor entity yet. We selected a NET and a the corresponding lymph node and liver metastases as well as the derivative cell lines to screen for somatic mutations in...
ORGANISM(S): Homo sapiens 
2012-07-16 | E-GEOD-39371 | biostudies-arrayexpress
GenomicsLactiplantibacillus plantarum strain:SNP-2 | isolate:SNP-2
Lactiplantibacillus plantarum strain:SNP-2 | isolate:SNP-2 Genome sequencing and assembly
PRJNA826272 | ENA
TranscriptomicsGenotyping by SNP array of individuals from the general population of Finland and from the population sub-isolate late-settlement area
The dataset includes SNP genotypes and CNP signals for 40 individuals from the capital region of Finland representing general population (IDs as FIN_#) and 41 individuals from the population sub-isolate Late-settlement area (IDs as LSFIN_#).
ORGANISM(S): Homo sapiens 
2010-09-21 | E-MTAB-382 | biostudies-arrayexpress
TranscriptomicsMolecular Analyses of 10q hemizygous deletions and parents
We report on the analyses of four unrelated patients with de novo, overlapping, hemizygous deletions of the long arm of chromosome 10. These include two small terminal deletions (10q26.2 to 10qter), a larger terminal deletion (10q26.12 to 10qter), and an interstitial deletion (10q25.3q26.13). Single...
ORGANISM(S): Homo sapiens 
2009-07-01 | E-GEOD-11958 | biostudies-arrayexpress
ProteomicsSalivary proteomics of sP and sNP rats
Sardinian alcohol-preferring (sP) and Sardinina alcohol-non preferring (sNP) rats have been selectively bred for opposite alcohol preference and consumption. The project proposed to identify salivary markers distinguishing the two rat lines possibly correlated to alcohol preference, by a proteomic a...
ORGANISM(S): Rattus norvegicus (Rat) 
2017-11-03 | PXD006997 | Pride
Saliva submandibular rat alcohol-preferring 
TranscriptomicsSNP data from genomic DNA in patient with rectal cancer
The identification of surrogate single nucleotide polymorphism (SNP) markers that can predict responses to preoperative chemoradiotherapy (CRT) in rectal cancer patients. Genome-wide association studies in clinical populations are theoretically capable of identifying markers that are capable of tumo...
ORGANISM(S): Homo sapiens 
2012-12-31 | E-GEOD-35282 | biostudies-arrayexpress
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