Soares A A - OmicsDI

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Unknown (4016)
Proteomics (120)
Transcriptomics (51)
Genomics (14)
Metabolomics (3)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (57)
Mus musculus (24)
Rattus norvegicus (7)
502779 (7)
Enchytraeus albidus (5)
Mycolicibacterium smegmatis MC2 155 (5)
502780 (4)
Rickettsia rickettsii (3)
Danio rerio (3)
Bothrops bilineatus (3)
Enchytraeus crypticus (2)
Anopheles gambiae (2)
Bacillus subtilis (2)
Bombus terrestris (2)
Mycolicibacterium smegmatis (2)
Staphylococcus aureus (2)
Staphylococcus saprophyticus (2)
Toxoplasma gondii (2)
Zea mays (2)
Euprymna scolopes (1)
Daphnia magna (1)
Schistosoma mansoni (1)
Apis mellifera (1)
Paracoccidioides brasiliensis (1)
Aedes aegypti (1)
Saccharomyces cerevisiae (1)
Nitrospirillum amazonense (1)
Notata (1)
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis) (1)
Strigomonas culicis (1)

Organisms

Rattus norvegicus (3)
Nitrospirillum amazonense (1)
Mus musculus (1)

Repository

pride (106)
biostudies-arrayexpress (49)
MassIVE (9)
ENA (8)
EGA (6)
PAXDB (4)
MetaboLights (3)
geo (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (27)
Epithelial cell (11)
Embryonic stem cell (8)
Fungal cell (4)
Blood plasma (3)
Neuron (3)
Root (3)
Saliva (3)
Blood (2)
Blood cell (2)
Brain (2)
Cell line cell (2)
Embryo (2)
Gland lumen (2)
Small intestine (2)
Venom (2)
B cell (1)
Blood serum (1)
Bone marrow (1)
Breast cancer stem cell (1)
Cell suspension culture (1)
Conidium (1)
Early embryonic cell (1)
Epithelium (1)
Extracellular vesicle (1)
Fibroblast (1)
HEK-293T cell (1)
HeLa cell (1)
Head and neck squamous cell carcinoma cell (1)
T cell (1)

Disease

Breast cancer (3)
Human immunodeficiency virus infectious disease (3)
Paracoccidioidomycosis (3)
Tuberculosis (3)
Plasmodium falciparum malaria (2)
Acute leukemia (1)
Brain cancer (1)
COVID-19 (1)
Celiac disease (1)
Coloboma (1)
Conventional osteosarcoma (1)
Dementia (1)
Disease free (1)
Glioblastoma (1)
Hepatocellular carcinoma (1)
Histoplasmosis (1)
Pancreatic cancer (1)
Pulmonary tuberculosis (1)
Schistosomiasis (1)
Skin melanoma (1)
Stomach cancer (1)
Tonne-Kalscheuer syndrome (1)
Trypanosomiasis (1)
Urinary bladder cancer (1)
Vulvovaginal candidiasis (1)

Technology Type

Mass Spectrometry (106)
Shotgun proteomics (56)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (15)
Gel-based experiment (10)
MSE (9)
Top-down proteomics (6)
Data-independent acquisition (4)
Mass spectrometry (3)
Data-dependent acquisition (3)
HDMSE (3)
Infinium Omni2.5M (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (4)
NextSeq 500 (2)
Xevo G2 Q-Tof (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer II (1)
Ion Torrent S5 XL (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2021 (16)
2023 (15)
2019 (14)
2025 (13)
2024 (12)
2018 (11)
2017 (10)
2016 (10)
2015 (10)
2013 (9)
2026 (9)
2011 (8)
2020 (8)
2010 (7)
2014 (5)
2022 (5)
2012 (2)
2009 (2)
2008 (2)
2007 (2)
2004 (2)
2006 (1)

UNIPROT ID/AC

246196.MSMEI_0054 (2)
246196.MSMEI_0075 (2)
246196.MSMEI_0389 (2)
246196.MSMEI_0784 (2)
246196.MSMEI_0974 (2)
246196.MSMEI_1000 (2)
246196.MSMEI_1011 (2)
246196.MSMEI_1026 (2)
246196.MSMEI_1198 (2)
246196.MSMEI_1222 (2)
246196.MSMEI_1367 (2)
246196.MSMEI_1680 (2)
246196.MSMEI_1690 (2)
246196.MSMEI_1744 (2)
246196.MSMEI_1958 (2)
246196.MSMEI_2108 (2)
246196.MSMEI_2225 (2)
246196.MSMEI_2227 (2)
246196.MSMEI_2228 (2)
246196.MSMEI_2231 (2)
246196.MSMEI_2232 (2)
246196.MSMEI_2233 (2)
246196.MSMEI_2235 (2)
246196.MSMEI_2236 (2)
246196.MSMEI_2237 (2)
246196.MSMEI_2238 (2)
246196.MSMEI_2239 (2)
246196.MSMEI_2241 (2)
246196.MSMEI_2244 (2)
246196.MSMEI_2248 (2)

CHEBI ID

CHEBI:135821 (1)
CHEBI:137819 (1)
CHEBI:138026 (1)
CHEBI:158820 (1)
CHEBI:158854 (1)
CHEBI:159174 (1)
CHEBI:160004 (1)
CHEBI:16214 (1)
CHEBI:163500 (1)
CHEBI:16414 (1)
CHEBI:164479 (1)
CHEBI:165804 (1)
CHEBI:16737 (1)
CHEBI:169008 (1)
CHEBI:169897 (1)
CHEBI:170340 (1)
CHEBI:172070 (1)
CHEBI:17215 (1)
CHEBI:172762 (1)
CHEBI:173157 (1)
CHEBI:173286 (1)
CHEBI:173600 (1)
CHEBI:173898 (1)
CHEBI:174796 (1)
CHEBI:180757 (1)
CHEBI:184240 (1)
CHEBI:184596 (1)
CHEBI:184926 (1)
CHEBI:185779 (1)
CHEBI:185983 (1)

Metabolite Name

L-Valine (2)
1-(1-Propenylthio)propyl propyl disulfide (1)
11,12,13-trihydroxy-9-octadecenoic acid (1)
12alpha-Hydroxy-3,7-dioxo-5beta-cholan-24-oic Acid (1)
17beta-Hydroxy-5a-androstan-3-one sulfate (1)
2,3-Butanediol (1)
2-Aminobenzoic acid (1)
2-Keto-d-gluconic acid (1)
2-Phenoxyethyl isobutyrate (1)
2-Succinylbenzoate (1)
3-Hexenyl 2-methylbutyrate (1)
3-Isopropylcatechol (1)
3-ketosphingosine (1)
3beta-Hydroxy-6-oxo-5a-cholan-24-oic Acid (1)
4-Keto-4'-hydroxyalloxanthin (1)
5E,12Z-Otadecadienoic acid (1)
6E-Octene-2,4-diynoic acid (1)
7-Ethoxy-4-methyl-2H-1-benzopyran-2-one (1)
8-hydroxy-17-octadecene-9,11-diynoic acid (1)
8S-hydroxy-2E-Decene-4,6-diynoic acid (1)
Acetoin (1)
Arg Asp Leu (1)
Arg Cys Gly (1)
Arg Met His (1)
Butyl ethyl malonate (1)
C16 Sphingosine (1)
Creatinine (1)
D-(+)-Galactose (1)
D-(+)-Turanose (1)
D-Glucosyldihydrosphingosine (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2014 (3)
2020 (2)
2025 (1)
2021 (1)
2019 (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Animal - Single-cell sequencing (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
Methylation profiling by array (1)

Release Date

2025 (459)
2023 (448)
2021 (432)
2022 (421)
2024 (367)
2020 (337)
2018 (248)
2019 (244)
2017 (220)
2016 (154)
2015 (149)
2014 (127)
2013 (78)
2011 (73)
2026 (72)
2012 (70)
2010 (51)
2009 (30)
2008 (19)
2007 (16)
2006 (13)
2005 (12)
2004 (11)
2003 (4)
2001 (4)
2002 (3)
2000 (3)

Lab affiliation

Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (4)
Federal University of Goias (4)
University of Dundee, School of Life Sciences (4)
Universidade Federal de Goias (3)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (2)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (2)
College of Life Sciences, University of Dundee (2)
Department:Intergrated biomedical sciences,Division:Chemical biology,Institute of infectious diseases and Molecular medicine(IDM),Faculty of health science, University of Cape Town, South Africa (2)
Federal University of Rio de Janeiro (2)
Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK (2)
Universidade Federal de Goiás (2)
University of Sharjah (2)
1 College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates 2 School of Dentistry, Cardiff University, Cardiff, United Kingdom (1)
1) OMICS and Analytical Development Group, BIOSCOPE Research Group, LAQV REQUIMTE, Chemistry Department, NOVA School of Science and Technology, Universidade NOVA de Lisboa, 2829-516, Caparica, Portugal (1)
1. Research Institute for Medical and Health Sciences, University of Sharjah, Sharjah, United Arab Emirates. 2. College of Pharmacy, Department of Medicinal Chemistry, University of Sharjah, United Arab Emirates (1)
CIISA - Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Lisboa, Portugal (1)
CNC-Center for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal; Biocant, Biotechnology Innovation Center, 3060-197 Cantanhede, Portugal (1)
Central Institute for Engineering, Electronics and Analytics, ZEA-3, Forschungszentrum Jülich, Jülich, Germany (1)
Centre of Biological Engineering (CEB), University of Minho, Braga, Portugal (1)
Centre of Molecular and Environmental Biology, University of Minho (Portugal) (1)
College of Medicine, Mohammed Bin Rashid University of Medicine and Health Science (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, South Africa (1)
Dana Farber Cancer Institute (1)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Instituto de Ciencias Ciências Exatas e Biológicas, Universidade Federal de Ouro Preto, Brasil (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Department of Chemical and Systems Biology, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, South Africa (1)
Department of Integrative Biomedical Science, Blackburn Group, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, South Africa (1)
Department of Integrative Biomedical Sciences & Institute of Infectious Disease & Molecular Medicine Faculty of Health Sciences, University of Cape Town Anzio, Observatory Cape Town 7925 South Africa (1)
Department of Integrative Biomedical Sciences & Institute of Infectious Disease and Molecular Medicine Faculty of Health Sciences, University of Cape Town Anzio, Observatory Cape Town 7925 South Africa (1)

Tags

xref:PubMed:32595139 (1)
xref:PubMed:20019818 (1)
xref:PubMed:21467843 (1)
xref:PubMed:33649217 (1)

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Bioactive Marine Xanthones: A Review.

Not available

S-EPMC8778107 | biostudies-literature

Structural determinants of ligand imprinting: a molecular dynamics simulation study of subtilisin in aqueous and apolar solvents.

Not available

S-EPMC3048422 | biostudies-literature

Therapy with bone marrow cells recovers gene expression alterations in hearts of mice with chronic chagasic cardiomyopathy

Chronic chagasic cardiomyopathy is one of the leading causes of heart failure in Latin American countries, being associated with intense inflammatory response and fibrosis. We have previously shown that bone marrow mononuclear cell (BMC) transplantation improves inflammation, fibrosis and ventricula...

ORGANISM(S): Mus musculus

2010-09-17 | E-GEOD-24088 | biostudies-arrayexpress

Development of a microarray for Enchytraeus albidus (Oligochaeta): Preliminary tool with diverse applications

Standard bioassays allow hazard assessment at the population level, but much remains to be learned about the molecular level response of organisms to stressors. The main aim of this study was the development of a DNA microarray for Enchytraeus albidus, a common soil worm species. Further, this micro...

ORGANISM(S): Enchytraeus albidus

2011-03-30 | E-GEOD-18569 | biostudies-arrayexpress

In Silico Approaches: A Way to Unveil Novel Therapeutic Drugs for Cervical Cancer Management.

Not available

S-EPMC8400112 | biostudies-literature

Eco-innovative aquafeeds biofortified with Asparagopsis taxiformis to improve the resilience of farmed white seabream (Diplodus sargus) to marine heatwave events.

Not available

S-EPMC11328060 | biostudies-literature

Oral interactions between a green tea flavanol extract and red wine anthocyanin extract using a new cell-based model: insights on the effect of different oral epithelia.

Not available

S-EPMC7387539 | biostudies-literature

Long COVID is not the same for everyone: a hierarchical cluster analysis of Long COVID symptoms 9 and 12 months after SARS-CoV-2 test.