Sod - OmicsDI

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Unknown (7120)
Transcriptomics (376)
Genomics (316)
Proteomics (137)
Metabolomics (36)
Other (9)
Models (2)
Clinical (2)
Multiomics (1)

Organisms

Homo sapiens (149)
Mus musculus (144)
Arabidopsis thaliana (17)
Caenorhabditis elegans (17)
Candida albicans (12)
Drosophila melanogaster (10)
Saccharomyces cerevisiae (8)
Rattus norvegicus (8)
Thermus thermophilus HB8 (6)
Escherichia coli (6)
Sus scrofa (3)
Platichthys flesus (2)
Neisseria meningitidis (2)
Canis lupus familiaris (2)
Streptococcus mutans UA159 (2)
Brassica napus (2)
cellular organisms (1)
Coccidioides immitis RS (1)
Brucella suis 1330 (1)
Leishmania amazonensis (1)
Sturnus vulgaris (1)
Acetobacter aceti NBRC 14818 (1)
Lactococcus garvieae (1)
Vanderwaltozyma polyspora (1)
Aspergillus flavus (1)
Trichoderma reesei QM6a (1)
Rhodococcus aetherivorans (1)
Bombyx mori (1)
Mus musculus musculus (1)
Macaca mulatta (1)

Organisms

Mus musculus (29)
Homo sapiens (15)
Oncorhynchus mykiss (7)
Caenorhabditis elegans (7)
Oryza sativa (4)
soil metagenome (4)
Arabidopsis thaliana (3)
unidentified (3)
Alteromonas macleodii ATCC 27126 (2)
Massilia atriviolacea (2)
Carassius auratus (2)
Taiwanofungus camphoratus (2)
Leptospira interrogans (2)
Brassica napus (2)
Triticum aestivum (2)
Rattus norvegicus (2)
Bacillus pumilus (2)
Handeliodendron bodinieri (1)
Chryseobacterium sp. HGX-24 (1)
Phytophthora ramorum (1)
Strongylocentrotus intermedius (1)
Tripsacum dactyloides (1)
Streptomyces seoulensis (1)
Capsicum annuum Conoides Group (1)
Allium sativum (1)
Larix kaempferi (1)
Ostrinia furnacalis (1)
Carassius carassius (1)
Rattus (1)
Ricinus communis (1)

Repository

biostudies-arrayexpress (313)
ENA (273)
geo (81)
iProX (41)
pride (41)
MetaboLights (36)
MassIVE (34)
EGA (27)
jPOST (14)
LINCS (10)
PanoramaPublic (3)
BioModels (2)
GPMDB (2)
PAXDB (2)

Tissue

Leaf (6)
Cell culture (5)
Plant cell (4)
Whole body (4)
Heart (2)
Root (2)
Fibroblast (2)
Liver (2)
Vascular cambium (1)
Escherichia coli metabolite (1)
Digestive gland (1)
Pancreatic cancer cell (1)
Fibroblast of cardiac tissue (1)
Mammary gland epithelial cell (1)
Pancreatic ductal cell (1)
Shoot (1)
Spinal cord (1)
Brain (1)
Primary cell (1)
Hepatocyte (1)
Lung (1)
Embryonic kidney cell line (1)
Epithelial cell (1)
Kidney (1)
Colon (1)

Disease

Normal (4)
Not Available (2)
Disease free (2)
Down syndrome (1)
Sporadic ALS (1)
Amyotrophic lateral sclerosis (1)
Non diseased (1)
Peripheral Nervous System Diseases (1)
Colorectal Neoplasms (1)
Angelman syndrome (1)
Mutational_hotspot (1)
Mixed disorder as reaction to stress (1)
Pancreatic cancer (1)
Crohn's disease (1)
Ulcerative colitis (1)
Leptospirosis (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (41)
Mass spectrometry assay (18)
Mass spectrometry (18)
Shotgun proteomics (16)
Bottom-up proteomics (8)
Gel-based experiment (7)
Data-dependent acquisition (7)
DNA sequencing (6)
SWATH-MS (4)
Mass spectrometry (4)
Data-independent acquisition (4)
RNA-seq (3)
ATAC-seq (3)
Immunopeptidomics (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, HiSeq X Ten, ILLUMINA (1)
Mass spectrometry imaging (1)
SWATH MS (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (12)
Q Exactive (6)
NextSeq 500 (5)
Illumina HiSeq 4000 (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 3000 (3)
Orbitrap Eclipse (3)
Orbitrap Fusion (3)
Q Exactive HF (3)
Orbitrap Fusion Lumos (3)
Illumina NovaSeq X (2)
Instrument (2)
Orbitrap Fusion ETD (2)
LTQ Orbitrap Elite (2)
Q Exactive HF-X (2)
ProFlex PCR system (1)
Covaris, NEBNext Ultra II DNA library prep kit (1)
ScanArray [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Affymetrix Fluidics Station 400 (1)
Axon GenePix 4000B scanning hardware (1)
NA (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
Illumina HiSeq 2000 (1)
AB SCIEX Triple TOF 5600 (1)
6560 Ion Mobility Q-ToF (Agilent instrument model) (1)
TimsTOF (Bruker instrument model) (1)
Agilent LC-QTOF 6545XT mass spectrometer (1)

Publication Date

2025 (50)
2014 (44)
2010 (42)
2026 (41)
2013 (41)
2012 (36)
2024 (34)
2011 (30)
2022 (29)
2008 (28)
2021 (26)
2020 (23)
2016 (23)
2015 (22)
2009 (20)
2023 (14)
2017 (12)
2018 (11)
2007 (11)
2019 (9)
2005 (4)
2006 (1)
2004 (1)

UNIPROT ID/AC

I1JBY6_SOYBN (2)
I1MV75_SOYBN (2)
K7MRI2_SOYBN (2)
I1N7R4_SOYBN (2)
C6SYN9_SOYBN (2)
I1NE48_SOYBN (2)
K7LQ39_SOYBN (2)
I1N4T4_SOYBN (2)
I1JZ11_SOYBN (2)
I1LKT4_SOYBN (2)
I1K5F3_SOYBN (2)
K7M2N6_SOYBN (2)
K7MNY8_SOYBN (2)
I1LDH1_SOYBN (2)
RR11_SOYBN (2)
I1J4K5_SOYBN (2)
I1L481_SOYBN (2)
K7KVV5_SOYBN (2)
K7MH54_SOYBN (2)
K7LP44_SOYBN (2)
C6T5D5_SOYBN (2)
I1NAU6_SOYBN (2)
K7K663_SOYBN (2)
K7L2L5_SOYBN (2)
K7MF33_SOYBN (2)
P06804 (1)
Q60680 (1)
Q60769 (1)
P25799 (1)
Q9Z1E3 (1)

CHEBI ID

CHEBI:7916 (5)
CHEBI:17750 (5)
CHEBI:70958 (4)
CHEBI:28822 (4)
CHEBI:26984 (4)
CHEBI:16450 (4)
CHEBI:48430 (4)
CHEBI:17562 (4)
CHEBI:28842 (4)
CHEBI:17268 (4)
CHEBI:17154 (4)
CHEBI:16865 (4)
CHEBI:15727 (4)
CHEBI:16196 (4)
CHEBI:16235 (4)
CHEBI:17568 (4)
CHEBI:27480 (4)
CHEBI:17405 (4)
CHEBI:30887 (4)
CHEBI:30915 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:15756 (4)
CHEBI:16828 (4)
CHEBI:17351 (4)
CHEBI:61051 (1)
CHEBI:29191 (1)
CHEBI:18059 (1)
CHEBI:18421 (1)
CHEBI:16240 (1)

Metabolite Name

Uridine (11)
Creatine (11)
L-Phenylalanine (10)
Indole (9)
Guanine (9)
Uracil (8)
L-Histidine (8)
Taurine (8)
Guanosine (8)
Betaine (7)
Thymine (7)
L-Lysine (7)
L-Proline (7)
L-Asparagine (7)
Undecanedioic acid (7)
L-Glutamine (7)
Xanthine (7)
Thymidine (7)
Creatinine (7)
L-Leucine (7)
L-Methionine (7)
L-Tyrosine (7)
Oleuropein (6)
Ketoleucine (6)
Niacinamide (6)
Erucic acid (6)
Piperidine (6)
Ergothioneine (6)
Succinic acid (6)
Allantoin (6)

First Public Date

2026 (74)
2025 (69)
2024 (23)
2022 (21)
2014 (21)
2023 (18)
2020 (11)
2021 (10)
2019 (10)
2017 (10)
2018 (3)
2015 (2)
2016 (1)

Modelling Approach

Ordinary differential equation model (2)

Study status

Recruiting (1)
Completed (1)

Lab affiliation

Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Center for Biotechnology & Biochemical Engineering Amity Institute of Biotechnology Amity University Uttar Pradesh Sector-125, Noida-201313 (U.P.) India (2)
School of Tropical Agriculture and Forestry, Hainan University (2)
University at buffalo (1)
King's BHF Centre of Research Excellence, King's College London, London, UK (1)
Division of Radiation Health, Department of Pharmaceutical Sciences, Neurobiology & Developmental Sciences, University of Arkansas for Medical Sciences (1)
Chemistry of Michigan State University (1)
Department of Biology, University of Rochester, NY, USA (1)
Forest Genetics and Plant Physiology (1)
China,Hunan Agricultural University,College of Agriculture (1)
Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78457 Konstanz, Germany (1)
Ningbo University (1)
Department of Anesthesiology and Critical Care Medicine Children’s Hospital of Philadelphia University of Pennsylvania Philadelphia, Pennsylvania (1)
Molecular Design and Nanotechnology, Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
Institute of Biochemistry and Biophysics, Pol. Acad. Sci. (1)
Enbironmental Microbiome and Biotechnology Laboratory, Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou, Zhejiang 310030, China (1)
Beijing Geriatric Healthcare and Disease Prevention Center, Xuanwu Hospital, Capital Medical University, Beijing, China. (1)
Department of Biology, Genetics Institute, University of Florida, Gainesville, FL 32610, USA (1)
Zhejiang Ocean University (1)
SULFAGING group; Leibniz Institute for Analytical Sciences - ISAS - eV. Dortmund, GERMANY (1)
Max Planck Institute for Biology of Ageing, Germany (1)
Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia. (1)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable (1)
College of Pharmacy, Gansu University of Chinese Medicine, Lanzhou, China (1)
ICAR-Central Inland Fisheries Research Institute, Fishery Resourse & Environmental Management Division, Biochemistry Lab-1, Proteomics Unit, Barrackpore, Kolkata, India (1)
Department of Biology, Genetics Institute, UF interdisciplinary Center for Biotechnology Research, Plant Molecular and Cellular Biology Program, University of Florida (1)
Department of Biology, University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany (1)
Department of Life Sciences, Walloon Agricultural Research Centre, Chaussée de Charleroi, P.B. 234, 5030 Gembloux, Belgium (1)

Keyword

Zinc (1)
Zinc Sulfate (1)
Oxidative stress (1)
Ketotifen (1)
Leucovorin (1)
Fluorouracil (1)
Oxaliplatin (1)

IsPrivate

False (2)

Classification

bacteria (5)
fungi (1)

Study type

Transcription profiling by array (204)
RNA-seq of coding RNA (53)
Other (11)
ChIP-seq (9)
RNA-seq of coding RNA from single cells (5)
RNA-seq of total RNA (4)
Unknown experiment type (3)
ChIP-chip by tiling array (3)
Animal - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Genotyping by array (2)
DNA-seq (2)
Interventional (2)
Transcription profiling by SAGE (1)
Human - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
CLIP-seq (1)
MicroRNA profiling by high throughput sequencing (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1177)
2025 (1135)
2023 (941)
2024 (834)
2021 (712)
2020 (473)
2019 (408)
2018 (275)
2017 (233)
2016 (186)
2014 (168)
2015 (166)
2026 (149)
2013 (126)
2012 (90)
2010 (81)
2011 (79)
2008 (54)
2009 (50)
2007 (23)
2004 (12)
2005 (11)
2006 (9)
2003 (9)
2000 (8)
2002 (5)
2001 (5)
1999 (5)
1998 (5)
1997 (1)

Location

Egypt (1)
Brazil (1)

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Profiling wt SOD versus ALS SOD1(G93A) mutant

Whole-genome profiling of SH-SY5Y cells was done on neuroblastoma SH-SY5Y stably transfected with cDNAs coding for SOD1WT or the mutant SOD1(G93A) protein. Five wt SOD versus five mutant SOD

ORGANISM(S): Homo sapiens

2010-12-22 | E-GEOD-21298 | biostudies-arrayexpress

Arabidopsis thaliana Transcriptome under Salt Stress

CuZn-superoxide dismutase (CuZn-SOD) and ascorbate peroxidase (APX) constitute first line of defence against oxidative stress. In the present study, PaSOD and RaAPX genes from Potentilla atrosanguinea and Rheum australe, respectively were overexpressed individually as well as in combination in Arabi...

ORGANISM(S): Arabidopsis thaliana

2014-10-06 | E-MTAB-4434 | biostudies-arrayexpress

Massilia atriviolacea strain:SOD

Massilia atriviolacea strain:SOD Genome sequencing and assembly

PRJNA508723 | ENA

Transcription profiling by array of E. coli BL21(DE3)::TN7T7 -SOD to analyze the cellular response of this plasmid-free expression system to high level expression of recombinant human super-oxide-dismutase

This transcription profiling time course experiment was conducted in order to analyze the cellular response of the plasmid-free expression system E.coli BL21(DE3)::TN7 to high level expression of recombinant human super-oxide-dismutase (SOD).Three biological replicates were generated by usi...

ORGANISM(S): Escherichia coli

2013-05-31 | E-MARS-24 | biostudies-arrayexpress

SOD:culture

In vitro experiment: bacterial composition of cecal content co-cultured with SOD

PRJEB20404 | ENA

SOD:obob

animal experiment: the effect of SOD on gut microbiota in OB/OB mice

PRJEB20406 | ENA

SOD:HFD

animal experiment: the effect of SOD on gut microbiota in mice fed with high fat diet

PRJEB20405 | ENA

SOD:HFD_Transcriptome

animal experiment: the effect of SOD on gut transcriptome in mice fed with high fat diet

PRJEB20476 | ENA

Transcription profiling of Drosophila overexpressing MnSOD

Profiled the transcriptional response to over-expression Manganese-SOD (MnSOD) in adult Drosophila. A doxycycline-regulated system was employed to induce MnSOD over-expression, resulting in mean and maximal lifespan increases of ~ 20%. Examination of the genome-wide response to this lifespan inter...

ORGANISM(S): Drosophila melanogaster

2008-06-15 | E-GEOD-7159 | biostudies-arrayexpress

SOD:HFD:Metagenome

animal experiment: the effect of SOD on gut metagenome in mice fed with high fat diet

PRJEB20753 | ENA

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