Spc - OmicsDI

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Transcriptomics (1844)
Unknown (1099)
Genomics (419)
Proteomics (305)
Metabolomics (44)
Other (9)
Models (6)
Clinical (3)
Multiomics (1)

Organisms

Homo sapiens (811)
Mus musculus (746)
Rattus norvegicus (143)
Saccharomyces cerevisiae (102)
Drosophila melanogaster (24)
Bos taurus (18)
Danio rerio (16)
Arabidopsis thaliana (13)
Salmo salar (12)
Oncorhynchus mykiss (12)
Mycobacterium tuberculosis (10)
Caenorhabditis elegans (10)
Escherichia coli (8)
Caulobacter vibrioides (6)
Gallus gallus (6)
Sus scrofa (6)
Bacillus subtilis (6)
Clavispora lusitaniae (5)
Solea senegalensis (5)
mouse gut metagenome (5)
Apis mellifera (5)
Candida albicans (5)
Platichthys flesus (4)
Bacillus subtilis subsp. subtilis str. 168 (4)
Pseudomonas aeruginosa (4)
Saccharomyces cerevisiae W303 (3)
Capra hircus (3)
Rhodospirillum rubrum (3)
Ambystoma mexicanum (3)
Kluyveromyces lactis (3)

Organisms

Mus musculus (68)
Homo sapiens (25)
Arabidopsis thaliana (4)
Drosophila melanogaster (3)
Bacillus subtilis (3)
Fructilactobacillus sanfranciscensis (2)
Limosilactobacillus fermentum (2)
Lactiplantibacillus plantarum (2)
Scylla serrata x Scylla paramamosain (1)
Microcystis aeruginosa SPC777 (1)
Leptospirillum ferriphilum (1)
Saccharomyces cerevisiae W303 (1)
Brevibacillus laterosporus (1)
Aedes albopictus (1)
Latilactobacillus curvatus (1)
mine metagenome (1)
synthetic metagenome (1)
Mycobacteroides abscessus ATCC 19977 (1)
Bacillus (1)
food fermentation metagenome (1)
fish metagenome (1)
Vibrio cholerae (1)
Levilactobacillus brevis (1)
Pediococcus pentosaceus (1)
soil metagenome (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (1946)
MassIVE (193)
ENA (170)
EGA (109)
pride (79)
geo (57)
MetaboLights (44)
jPOST (12)
PanoramaPublic (12)
Cell Collective (6)
iProX (4)
PeptideAtlas (4)
PAXDB (3)
GPMDB (2)
EVA (1)

Tissue

Cell culture (22)
Cell suspension culture (6)
B cell (5)
Fibroblast (5)
Epithelial cell (4)
Permanent cell line cell (4)
Plant cell (4)
Brain (3)
Lung (3)
Blood plasma (2)
Blood serum (2)
Colon (2)
Leaf (2)
Milk (2)
Primary cell (2)
T cell (2)
Urine (2)
Adrenal medulla (1)
Blood cell (1)
Cholangiocyte (1)
Dendritic cell (1)
Lens nucleus (1)
Macrophage (1)
Mammary gland (1)
Ovarian fluid (1)
Photosynthetic cell (1)
Prostate gland (1)
Skin (1)
Spore (1)
Stem (1)

Disease

Normal (16)
Adenocarcinoma (3)
Breast cancer (3)
Alzheimer's disease (2)
Adenocaricinoma (1)
Sporadic ALS (1)
Tumor bearing (1)
Aviremic HIV (1)
Amyotrophic lateral sclerosis (1)
Mild spinal cord injury (1)
Uninjured (1)
SMARD1 (1)
Monoclonal gammopathy of undetermined significance (MGUS) (1)
Inflammatory breast carcinoma (1)
Alpha-1 antitrypsin deficiency-related emphysema (1)
Metabolic syndrome (1)
Mild early symptoms (1)
Replicate control (1)
Large cell carcinoma (1)
Rheumatoid Arthritis (1)
Serratia marcesens infected (1)
EAE (1)
Mild hyperglycemia (1)
Gliosarcoma (1)
Active Crohn's disease (1)
Mild hyperglycemia, liver dysfunction, and renal glycosuria (1)
Colon mucinous adenocarcinoma (NCI Metathesaurus CL029553) in DiseaseLocation rectosigmoid colon has DiseaseStaging T3N2M1 (1)
Spinal muscular atrophy (1)
Pneumococcal meningitis (1)
CAMN (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (47)
Mass spectrometry (27)
Mass spectrometry assay (13)
Affinity purification coupled with mass spectrometry proteomics (13)
Bottom-up proteomics (11)
Gel-based experiment (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
NMR spectroscopy (3)
Illumina Genome Analyzer II (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina Infinium HumanCoreExome Beadchip (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
NMR spectroscopy assay (1)
Data-dependent acquisition (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (39)
Illumina HiSeq 2500 (25)
Illumina HiSeq 2000 (22)
NextSeq 500 (19)
Illumina HiSeq 4000 (15)
Illumina MiSeq (12)
Scanning hardware (7)
Illumina Genome Analyzer II (6)
Illumina NovaSeq X (5)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Illumina Genome Analyzer IIx (3)
GenePix 4000B [Axon Instruments] (3)
NextSeq 550 (3)
BD FACS Aria III (2)
FUJIFILM BAS-5000 scanning hardware (2)
Nanodrop N1000 spectrophotometer (2)
BAS-5000 [FUJIFILM] (2)
Axon- GenePix4000B (2)
ScanArray Express HT [PerkinElmer] (2)
Affymetrix Fluidics Station 400 (2)
Axon GenePix 4000B scanning hardware (2)
Vortex (2)
Affymetrix (2)
Illumina (2)
NextSeq 2000 (2)
Agilent Tapestation 4200 (1)
BD Influx Cell Sorter (1)
NanoDrop 2000 Spectrophotometer, Agilent 2100 Bioanalyzer (1)
ProFlex PCR system (1)
Faxitron 43855-D irradiator (1)

Publication Date

2010 (293)
2014 (199)
2008 (192)
2013 (174)
2009 (161)
2015 (160)
2012 (155)
2011 (145)
2007 (127)
2016 (123)
2021 (70)
2023 (68)
2018 (67)
2022 (61)
2025 (52)
2020 (48)
2024 (45)
2017 (42)
2026 (38)
2019 (33)
2006 (27)
2005 (26)
2004 (16)
2003 (3)
2002 (2)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5A_HUMAN (1)
2A5B_HUMAN (1)
2A5D_HUMAN (1)
2A5D_YEAST (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAA_YEAST (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
2ABG_HUMAN (1)
3BHS1_HUMAN (1)
3BHS2_HUMAN (1)
3BP1_HUMAN (1)
3BP5_HUMAN (1)
3HAO_HUMAN (1)
3HAO_YEAST (1)
3HIDH_HUMAN (1)
41_HUMAN (1)
4932.YDL191W (1)
4932.YDR025W (1)

CHEBI ID

CHEBI:17596 (9)
CHEBI:17368 (9)
CHEBI:16704 (8)
CHEBI:17895 (8)
CHEBI:16566 (7)
CHEBI:18176 (7)
CHEBI:17268 (7)
CHEBI:16977 (7)
CHEBI:16737 (7)
CHEBI:16414 (7)
CHEBI:17295 (7)
CHEBI:16828 (7)
CHEBI:17687 (7)
CHEBI:30769 (7)
CHEBI:28238 (6)
CHEBI:48430 (6)
CHEBI:9300 (6)
CHEBI:28044 (6)
CHEBI:28834 (6)
CHEBI:16359 (6)
CHEBI:48131 (6)
CHEBI:17750 (6)
CHEBI:18237 (6)
CHEBI:16196 (6)
CHEBI:18050 (6)
CHEBI:16113 (6)
CHEBI:17568 (6)
CHEBI:18300 (6)
CHEBI:17203 (6)
CHEBI:16015 (6)

Metabolite Name

L-Tyrosine (12)
Xanthine (10)
L-Phenylalanine (10)
Inosine (10)
Hypoxanthine (9)
Riboflavin (8)
L-Tryptophan (8)
L-Glutamine (8)
L-Serine (8)
Guanosine (8)
Betaine (7)
Choline (7)
Adenosine (7)
Sucrose (7)
Citramalic Acid (6)
Piperidine (6)
Isoquinoline (6)
Taurine (6)
Xanthosine (6)
L-Arginine (6)
Ectoine (6)
Uridine (6)
L-Valine (6)
L-Isoleucine (6)
L-Leucine (6)
L-Alanine (5)
Uracil (5)
N-Acetylhistamine (5)
Hydroxyphenyllactic acid (5)
Aspartame (5)

First Public Date

2025 (24)
2024 (23)
2026 (21)
2023 (21)
2022 (17)
2020 (17)
2021 (11)
2018 (10)
2014 (10)
2019 (7)
2017 (7)
2013 (2)

Classification

bacteria (1)

Study status

Other (2)
Recruiting (1)

Study type

Transcription profiling by array (1339)
RNA-seq of coding RNA (181)
ChIP-seq (105)
Unknown experiment type (46)
ChIP-chip by tiling array (42)
Comparative genomic hybridization by array (30)
Other (30)
DNA-seq (19)
RNA-seq of coding RNA from single cells (19)
ChIP-chip by array (18)
Methylation profiling by array (13)
MicroRNA profiling by array (11)
RNA-seq of non coding RNA (10)
Transcription profiling by SAGE (7)
Transcription profiling by RT-PCR (7)
Cell line - High-throughput sequencing (5)
Genotyping by array (5)
Bisulfite-seq (5)
High-throughput sequencing (4)
Methylation profiling by high throughput sequencing (4)
RNA-seq of total RNA (4)
Animal - Single-cell sequencing (3)
Animal - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
Human - High-throughput sequencing (2)
RNAi profiling by array (2)
ATAC-seq (2)
Proteomic profiling by array (2)
Cell line - Single-cell sequencing (1)
Animal - Two-color microarray (1)

Release Date

2010 (307)
2014 (233)
2008 (197)
2013 (191)
2015 (188)
2012 (173)
2009 (169)
2011 (155)
2016 (148)
2025 (145)
2021 (138)
2023 (133)
2007 (133)
2022 (126)
2024 (118)
2020 (102)
2018 (92)
2019 (89)
2017 (80)
2026 (41)
2006 (31)
2005 (28)
2004 (17)
2002 (3)
2000 (3)
2003 (2)
2001 (2)
1999 (1)

Lab affiliation

Director, Proteomics & Peptide Synthesis Core University of Michigan Michigan Medicine C570C MSRB II SPC 5674 (2)
Institute for Microbiology University of Greifswald Friedrich-Ludwig-Jahnstr. 15 17489 Greifswald Germany (2)
MRC Laboratory of Molecular Biology, Cell Biology Division (2)
Novartis Institute of Biomedical Research, Cambridge, MA (2)
Porto Conte Ricerche, Alghero, Sardinia, Italy (2)
Sichuan University (2)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany (1)
BIOCEV, First Faculty of Medicine, Charles University, Czech Republic (1)
CNRS, IBMC, FRC1589, Proteomics Core Facility (1)
Case Western Reserve University School of Medicine (1)
Centre Esther Koplowitz (CEK) (1)
Chemistry and Biomolecular Sciences, Macquarie University, North Ryde (1)
Cornell University (1)
Department of Biological Sciences University of Delaware Newark, DE, USA. (1)
Department of Biology Wanek School of Natural Sciences High Point University 1 N University Pkwy High Point, NC 27368 USA (1)
Department of Food Safety and Environmental Health, University of Helsinki, Finland (1)
Department of Microbial Proteomics, Institute for Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Proteomics, Helmholtz Centre for Environmental Research – UFZ, Permoserstr. 15, 04318 Leipzig, Germany (1)
Department: Department of Microbiology and Immunology Lab: Host and Pathogen Interactivity Lab Institute: National University of Singapore Country: Singapore (1)
Ernst-Moritz-Arndt University Greifswald Institute of Microbiology Friedrich-Ludwig-Jahn-Strasse 15 D-17487 Greifswald, Germany (1)
Faculdade de Veterinária, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil (1)
General Botany, Matthias-Schleiden-Institut, Friedrich-Schiller University Jena Am Planetarium 1, 07743 Jena, Germany (1)
Gladstone Institutes (1)
Head of Proteomics Plattform Department of Health Sciences and Technology Institute of Molecular Systems Biology ETH Zurich Switzerland (1)
Henriette A. Remmer, Ph.D. Director, Proteomics & Peptide Synthesis Core University of Michigan C570C MSRB II SPC 5674 1150 W. Medical Center Drive Ann Arbor, MI 48109 https://brcf.medicine.umich.edu/cores/proteomics-peptide-synthesis/ (1)
Henriette A. Remmer, Ph.D. Director, Proteomics & Peptide Synthesis Core University of Michigan Michigan Medicine C570C MSRB II SPC 5674 (1)
Inflammation and Macrophage Plasticity Lab, CIC bioGUNE (1)
Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain (1)
Institute for Research in Biomedicine, Baldiri i Reixac 10, Barcelona 08028, Spain (1)
Institute for Research in Biomedicine, Baldiri i Reixac 10, Barcelona 08028, Spain. Departament de Bioquímica i Biomedicina Molecular, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain. Centro de Investigación Biomédica en Red de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM) Instituto de Salud Carlos III, Spain. (1)

Location

Germany (2)
Sweden (1)

Keyword

Dihydropyrimidine (1)
Antisecretory factor (1)

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Fructilactobacillus sanfranciscensis strain:SPC-SNU-70-4

Fructilactobacillus sanfranciscensis strain:SPC-SNU-70-4 Genome sequencing and assembly

PRJNA938982 | ENA

Pediococcus pentosaceus strain:SPC L77-1

Pediococcus pentosaceus strain:SPC L77-1 Genome sequencing

PRJNA1087558 | ENA

Limosilactobacillus fermentum strain:SPC L75-1

Limosilactobacillus fermentum strain:SPC L75-1 Genome sequencing

PRJNA1052381 | ENA

Transcription profiling by array of PaTu II cells differentially treated with sphingosylphosphorylcholine (SPC)

Sphingosylphosphorylcholine (SPC) is a bioactive lipid with multiple biological roles including the regulation of differentiation in embryonic and cancer cells. PaTu II pancreatic cancer cells were incubated with 15 μM SPC in serum-free Medium for 2 h or left untreated. Duplicates of 3 independent e...

ORGANISM(S): Homo sapiens

2015-02-27 | E-MTAB-3363 | biostudies-arrayexpress

Lactiplantibacillus plantarum strain:SPC-SNU-72-1

Lactiplantibacillus plantarum SPC-SNU-72-1 Genome sequencing and assembly

PRJNA949351 | ENA

SPC+ KP vs SPC+ KPG1 tumours

PRJNA577058 | ENA

Chemoproteomic Target Identification for SP100030 and SPC-839

SP100030 and SPC-839 are structurally distinct molecules sharing similar cellular activity profiles. We used click chemistry-mediated chemoproteomics to identfy candidate mechanistic targets for these small molecules.

ORGANISM(S): Homo sapiens (Human)

2024-03-05 | PXD041193 | Pride

Fructilactobacillus sanfranciscensis

Fructilactobacillus sanfranciscensis SPC-SNU-70-4 Genome sequencing and assembly

PRJNA938974 | ENA

Microarray analysis of lung SPC/GFP+ EpCAM+ cells

PRJNA535509 | ENA

Transcriptome anlaysis of Th9 cells differentiated with or without sphingosylphosphorylcholine (SPC)

PRJNA997272 | ENA

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3744 Results

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