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ProteomicsMHC class I loaded ligands from breast cancer cell lines: A potential HLA-I-typed antigen collection
We sought to build a catalog of epitopes presented by breast cancers using a renewable resource of well-characterized breast cancer cell lines. Starting from 70 breast cancer cell lines, we measured MHC class I abundance and used pre-existing RNAseq data to identify either HLA-A*02 or MHC class I-po...
ORGANISM(S): Homo sapiens (Human) 
2018-01-16 | PXD006406 | Pride
Immune system Mass spectrometry Human Mhc class 1 ligands Hla typing Peptide sequencing Breast cancer Cell lines Immunoprecipitation Rna-seq 
TranscriptomicsTwo yeast forkhead genes regulate the cell cycle and pseudohyphal growth
There are about 800 genes in Saccharomyces cerevisiae whose transcription is cell-cycle regulated. Some of these form clusters of co-regulated genes. The 'CLB2' cluster contains 33 genes whose transcription peaks early in mitosis, including CLB1, CLB2, SWI5, ACE2, CDC5, CDC20 and other genes importa...
ORGANISM(S): Saccharomyces cerevisiae 
2005-08-24 | E-GEOD-3182 | biostudies-arrayexpress
UnknownAn open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences.
Not available
S-EPMC10291816 | biostudies-literature
TranscriptomicsDistinctive microRNA profiles relating to patient survival in esophageal squamous cell carcinoma
We have investigated expressed microRNA in cryo-preserved esophageal cancer tissues using advanced microRNA microarray techniques. Our microarray analyses reveal a unique microRNA expression signature composed of 40 genes which can distinguish normal from malignant esophageal tissue. Some microRNA...
ORGANISM(S): Homo sapiens 
2010-05-26 | E-GEOD-6188 | biostudies-arrayexpress
UnknownAnalysis of a Genetic Polymorphism in the Costimulatory Molecule TNFSF4 with Hematopoietic Stem Cell Transplant Outcomes.
Not available
S-EPMC4743880 | biostudies-literature
UnknownHER2 heterogeneity and treatment response-associated profiles in HER2-positive breast cancer in the NCT02326974 clinical trial.
Not available
S-EPMC10977978 | biostudies-literature
UnknownThe History of Chromosomal Instability in Genome-Doubled Tumors.
Not available
S-EPMC7616501 | biostudies-literature
UnknownHuman Tumor-Associated Macrophage and Monocyte Transcriptional Landscapes Reveal Cancer-Specific Reprogramming, Biomarkers, and Therapeutic Targets.
Not available
S-EPMC6472943 | biostudies-literature
TranscriptomicscaArray_gray-00248: Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
We measured baseline gene expression profiles for a set of breast tumors. gray-00248 Assay Type: Gene Expression Provider: Affymetrix Array Designs: U133AAofAv2 Organism: Homo sapiens (ncbitax) Tissue Sites: mammary gland Material Types: synthetic_RNA, total_RNA Disease States: breast cancer
ORGANISM(S): Homo sapiens 
2015-05-20 | E-GEOD-69031 | biostudies-arrayexpress
GenomicsAssessment of genomic copy number alterations in breast cancer
The aim of this study was to assess genomic copy number alterations in a panel of breast cancer cell lines. These data were used to identify common aberrations associated with breast cancer, and also to identify aberrations associated with response to therapeutic compounds.
EGAS00000000059 | EGA
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