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ProteomicsFormic acid and Acetic acid for peptide LC-MS
Despite the general acceptance of formic acid as the additive of choice for peptide reversed-phase LC-MS/MS applications, some still argue that the selection of acetic acid represents a better option. To settle this debate, we investigated both the difference in MS sensitivity and chromatographic be...
ORGANISM(S): Homo Sapiens (human) 
2022-12-10 | PXD029416 | JPOST Repository
ProteomicstimsTOF Pro datasets for CCS prediction with Mascot-Percolator.
Tryptic digested E. coli dataset fractionated by SCX stagetip and applied to test the CCS prediction model. The Peaklist from the MS/MS spectra as mascot generic format (MGF) was created by compass DataAnalysis 5.2.216.271.5315. Protein and peptides were identified by by Mascot-Percolator.
ORGANISM(S): Escherichia Coli 
2021-09-06 | PXD026087 | JPOST Repository
ProteomicstimsTOF Pro datasets for CCS prediction
Tryptic digested E. coli dataset fractionated by SCX stagetip and applied to test the CCS prediction model.
ORGANISM(S): Escherichia Coli 
2021-09-06 | PXD022800 | JPOST Repository
ProteomicstimsTOF Pro datasets for CCS prediction
The contribution of peptide amino-acid sequence to collision cross-section values (CCS) has been investigated using a dataset of ~134,000 peptides of four different charge states (1+ to 4+). The migration data collection was acquired using a two-dimensional LC/trapped ion mobility spectrometry/quadr...
ORGANISM(S): Homo Sapiens (human) 
2021-09-06 | PXD021440 | JPOST Repository
ProteomicsConfident identification of citrullination and carbamylation assisted by peptide retention time prediction
We used 2D-LC-MS/MS methods to examine the impact of the biologically important PTM citrullination and its analogue carbamylation on peptide retention. Three first-dimension separation systems were evaluated: high-pH, HILIC and SCX, with the instrument interface separation happening at low-pH RP for...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Sus Scrofa (ncbitaxon:9823) Gallus Gallus (ncbitaxon:9031) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
MSV000086214 | MassIVE
ProteomicsIntegrating Proteomes for Lung Tissue and Lavage Reveals Pathways that Integrate Responses in Allergen-Challenged Mice
To capture interplay between biological pathways we analyzed the proteome from matched lung tissue and bronchoalveolar lavage fluid (BALF) of individual allergen-naive and house dust mite (HDM)-challenged BALB/c mice, a model of allergic asthma. Unbiased label-free LC-MS/MS analysis quantified 2,675...
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2020-08-24 | MSV000086003 | MassIVE
UnknownAbstracts of presentations to the Annual Meetings of the Canadian Association of General Surgeons Canadian Association of Thoracic Surgeons Canadian Hepato-Pancreato-Biliary Society Canadian Society of Surgical Oncology Canadian Society of Colon and Rectal Surgeons: Victoria, BC Sept. 10-13, 2009.
Not available
S-EPMC2726442 | biostudies-literature
UnknownEffect of Convalescent Plasma on Organ Support-Free Days in Critically Ill Patients With COVID-19: A Randomized Clinical Trial.
Not available
S-EPMC8491132 | biostudies-literature
UnknownTocilizumab in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial.
Not available
S-EPMC8084355 | biostudies-literature
UnknownConvalescent plasma in patients admitted to hospital with COVID-19 (RECOVERY): a randomised controlled, open-label, platform trial.
Not available
S-EPMC8121538 | biostudies-literature
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