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TranscriptomicsChromatin based modeling of transcription rates identifies the contribution of different regulatory layers to steady-state mRNA levels
Messenger RNA levels in eukaryotes are balanced by two consecutive regulatory layers. Primary, transcriptional regulation at the level of chromatin and secondary, post-transcriptional regulation of the initial transcript in the cytoplasm. Each layer is individually studied in mechanistic detail, whi...
ORGANISM(S): Mus musculus 
2012-07-23 | E-GEOD-33252 | biostudies-arrayexpress
TranscriptomicsBudding yeast respiratory oscillations in a transient state
RNAseq analysis of budding yeast respiratory oscillations was performed at high temporal resolution (4 min, 24 samples), covering 2.5 cycles of the short period oscillation of the IFO 0233 strain of budding yeast. This and related systems were previously analyzed by microarrays and RNAseq, but the e...
ORGANISM(S): Saccharomyces cerevisiae 
2022-07-11 | E-MTAB-11901 | biostudies-arrayexpress
ProteomicsH.pylori 26695 - Whole organism, SC (Müller,j_proteomics,2013)
abundance based on Spectral counting, Interaction consistency score: 10.3, Coverage: 93
ORGANISM(S): 85962 
2013-00-00 | 3620106669 | PAXDB
Genomicsena-DATASET-DKFZ-IBIOS-17-08-2015-09:13:01:216-19 - samples
PAR-CLIP was performed on the Argonaute-2 protein (AGO2) in four lymphoma cell lines: Namalwa Raji SU-DHL-4 SU-DHL-6
EGAD00001001468 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-16-11-2015-13:05:39:993-4 - samples
Part of WGS seq data of Maligant Lymphoma study (ICGC)
EGAD00001001673 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-16-09-2015-13:05:30:578-414 - samples
After overexpression and knockdown of both described novel miRs nmiR-1 and nmiR-2 in BL cell lines (SU-DHL4 for nmiR-1 and Raji for nmiR-2), we performed regular RNA-Seq (including Mock controls for all cell lines) to identify their direct and indirect downstream mRNA targets.
EGAD00001001612 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-06-10-2015-14:15:14:065-198 - samples
miRNA seq data of 13 cases (MMML)
EGAD00001001632 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-16-11-2015-12:46:40:494-3 - samples
Part of RNA sequencing data of Malignant Lymphoma Study (ICGC)
EGAD00001001672 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-23-09-2015-12:28:32:695-418 - samples
miRNA seq data of 43 cases out of dataset EGAD00001000650 (MMML)
EGAD00001001619 | EGA
GenomicsGenome-wide identification of distinct miRNA-mRNA target regulation pairs in Non-Hodgkin lymphomas: a report from the ICGC MMML-Seq consortium
We obtained miRNA profiles by miRnome sequencing from ICGC MMML-Seq patients diagnosed with Burkitt lymphoma, diffuse large B-cell lymphoma and follicular lymphoma and provide evidence of subtype-specific miRNA expression differences. We describe differentially expressed, mutated, edited and not pre...
EGAS00001001394 | EGA
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