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Unknown (386)
Transcriptomics (46)
Proteomics (10)
Genomics (5)
Metabolomics (4)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (24)
Mus musculus (15)
Rattus norvegicus (5)
Aspergillus fumigatus (2)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (1)
Shewanella oneidensis MR-1 (1)
Campylobacter jejuni (1)
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Aspergillus flavus NRRL3357 (1)
Canis lupus familiaris (1)

Organisms

Alphavirus (1)
Vibrio cholerae (1)

Repository

biostudies-arrayexpress (47)
pride (9)
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ENA (3)
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Tissue

Cell culture (2)
Liver (2)
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Disease

Metastatic melanoma (2)
Uninfected (1)
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Normal (1)
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Tooth disease (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (6)
Mass spectrometry (3)
Gel-based experiment (2)
Fluorescence imaging (1)
Fluorescence intensity (1)
NMR spectroscopy (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
NextSeq 500 (4)
Qiagen RNEasy Mini ki (1)
BD FACSAriaIIu cell sorter (1)
Poly-T oligo-attached magnetic beads (1)
CytoFLEX SRT Benchtop Cell Sorter (1)
Sony SH800S Cell Sorter (1)
GenePix 4000A [Axon Instruments] (1)
NA (1)
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Liquid Chromatography MS - negative - reverse phase (1)
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Publication Date

2026 (7)
2015 (7)
2025 (6)
2010 (6)
2007 (5)
2008 (4)
2012 (3)
2011 (3)
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2013 (2)
2009 (2)
2005 (2)
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CHEBI ID

CHEBI:15428 (2)
CHEBI:15756 (2)
CHEBI:28842 (2)
CHEBI:78320 (2)
CHEBI:10642 (1)
CHEBI:107662 (1)
CHEBI:121564 (1)
CHEBI:134623 (1)
CHEBI:134625 (1)
CHEBI:137384 (1)
CHEBI:138776 (1)
CHEBI:141526 (1)
CHEBI:141528 (1)
CHEBI:141529 (1)
CHEBI:141530 (1)
CHEBI:141531 (1)
CHEBI:141532 (1)
CHEBI:141533 (1)
CHEBI:141534 (1)
CHEBI:141535 (1)
CHEBI:141536 (1)
CHEBI:141537 (1)
CHEBI:141538 (1)
CHEBI:141539 (1)
CHEBI:141540 (1)
CHEBI:141541 (1)
CHEBI:141542 (1)
CHEBI:141543 (1)
CHEBI:141544 (1)
CHEBI:141545 (1)

Metabolite Name

(2S,3S,5R,6R)-3-{[2-({N-[(2R)-2,4-Dihydroxy-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-6-(1-hydroxyethyl)-7-oxo-1-azabicyclo[3.2.0]heptane-2-carboxylic acid (1)
1,7-Bis(4-hydroxy-3-methoxyphenyl)-1,4,6-heptatrien-3-one (1)
1,7-bis-(4-hydr oxyphenyl)-1,4,6-heptatrien-3-one (1)
1-(4-hydroxy phenyl)-7-(4-hydroxy-3-meth oxyphenyl)1,4,6-heptatrien-3-one (1)
1-(4-hydroxy-3-methoxy phenyl)-7-(4-hydroxy-3,5-dimethoxy phenyl)-1,4,6-heptatrien-3-one (1)
13C6-Glucose, 6TMS + oxime (1)
2,2'-[3-(2-Methoxyphenyl)-1,2-propanediyl]bis(1H-benzimidazole) (1)
2,4,6-Trihydroxy-5-[1-(3-hydroxy-1,1,5-trimethyldecahydrocyclopropa[e]inden-5-yl)-3-methylbutyl]isophthalaldehyde (1)
2,6,9-Trihydroxy-11-(1-hydroxy-2-propanyl)-1,5,10-trimethyl-8-oxatetracyclo[7.4.1.1~7,10~.0~2,7~]pentadec-11-ene-13,15-dione (1)
2-Deoxy-D-glucose + 4TMS + Oxime (1)
2-deoxy-ribose + 3TMS + Oxime (1)
2-phosphoglycerate + 4TMS (1)
27D-Myristic Acid + TMS -CH3 + H2O (1)
3-phosphoglycerate + 4TMS (1)
4-Undecylbenzenesulfonic acid (1)
4-fluoro-4'- hydroxylbenzophenone (1)
6-Phosphogluconic acid + 7TMS (1)
7-(4-Hydroxy-3,5-dimethoxyphenyl)-1-(4-hydroxy-3-methoxyphenyl)hepta-4,6-dien-3-one (1)
7-(4-hydroxy-3-methoxyphenyl)-1-(4-hydroxy phenyl)-4,6-heptadien-3-one (1)
7-[(6-Hydroxy-2,5,5,8a-tetramethyl-4-oxo-1,4,4a,5,6,7,8,8a-octahydro-1-naphthalenyl)methoxy]-2H-chromen-2-one (1)
8,8-Dimethyl-2-oxo-7,8-dihydro-2H,6H-pyrano[3,2-g]chromen-7-yl (2Z)-2-methyl-2-butenoate (1)
Adonitol + 5TMS (1)
Bisdemethoxycurcumin (1)
C10 Decane (1)
C12 Dodecane (1)
C15 Pentadecane (1)
C19 Nonadecane (1)
C22 Docosane (1)
Chavicol (1)
Cholesterol, TMS (1)

First Public Date

2019 (1)
2014 (1)
2013 (1)

Classification

viruses (1)
bacteria (1)

Study type

Transcription profiling by array (31)
RNA-seq of coding RNA from single cells (6)
RNA-seq of coding RNA (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
Transcription profiling by RT-PCR (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (45)
2024 (44)
2022 (40)
2020 (40)
2023 (38)
2021 (37)
2019 (27)
2017 (20)
2014 (18)
2018 (16)
2016 (15)
2015 (15)
2013 (14)
2012 (13)
2010 (11)
2026 (9)
2011 (8)
2007 (7)
2008 (5)
2005 (4)
2009 (3)
2004 (1)
2006 (1)
2000 (1)

Lab affiliation

Clinical Protein Science & Imaging, Dept. of Measurement Technology and Industrial Electrical Engineering, Lund University, Lund, Sweden (2)
Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, P.R. China (1)
Department Functional Proteomics Medizinisches Proteom-Center Ruhr-University Bochum Building ProDi Gesundheitscampus 4 44780 Bochum Germany (1)
Head, NHS Highly Specialised Mitochondrial Diagnostic Laboratory and Professor of Mitochondrial Pathology, Wellcome Centre for Mitochondrial Research, Newcastle University, UK (1)
Lab's head of proteomics platform, Montpellier hospital (1)
Mitochondrial Research Group, Faculty of Medical Sciences, Newcastle University, UK (1)
Shenzhen Center for Disease Control and Prevention (1)
Veterinary Clinical Sciences, Louisiana State University School of Veterinary Medicine, Baton Rouge, Louisiana 70803 (1)

Tags

pathogen (2)
xref:EuropePMC:PMC5974483 (1)
pathogen:virus (1)
pathogen:bacterium (1)

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Transcription profiling of mouse liver from inbred stains SM/J and NZB/BinJSM

3 x 3 comparison of the inbred strains SM/J and NZB/BinJ. Experiment Overall Design: Simple comparison of native untreated gene expression profiles of female 8wk old SM mice (x3) by female 8wk old NZB mice (x3)

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-4765 | biostudies-arrayexpress

Whole-genome analysis reveals possible sources of ALV-J infection in an anyi tile-like gray chicken flock.

Not available

S-EPMC8980333 | biostudies-literature

Deciphering Black Extrinsic Tooth Stains composition in Children using metaproteomics

The present study focuses on the use of a metaproteomic approach to analyse Black Extrinsic Tooth Stains, a specific type of pigmented extrinsic substance, in a cohort of 96 Children. Metaproteomics is a powerful emerging technology that successfully enabled human protein and bacterial identificatio...

ORGANISM(S): Homo sapiens (Human)

2024-07-25 | PXD029245 | Pride

CGH Analysis of C. jejuni isolates

We performed microarray CGH analysis of 104 neuropathogenic and enteritis only stains of C. jejuni. Keywords: Individual hybridizations, CGH We measured signal intensity for tester strain versus control strain Cj NCTC 11168 for 104 isolates of C. jejuni.

ORGANISM(S): Campylobacter jejuni

2007-09-30 | E-GEOD-3579 | biostudies-arrayexpress

Salt stains from evaporating droplets.

Not available

S-EPMC4445064 | biostudies-literature

Revisiting the use of CK7 and CK20 immunohistochemical stains in pathological diagnoses.

Not available

S-EPMC11987302 | biostudies-literature

Investigation of the Application of miR10b and miR135b in the Identification of Semen Stains.

Not available

S-EPMC4565637 | biostudies-literature

Effect of Artemisinin on Aspergillus fumigatus gene expression program

We examined the antifungal activity of artemisinin against Aspergillus fumigatus (A. fumigatus), a pathogenic filamentous fungus responsible for allergic and invasive aspergillosis in humans and analyzed transcript profiles of the fungus on exposure to Artemisinin. A. fumigatus spores were cultured ...

ORGANISM(S): Aspergillus fumigatus

2011-05-11 | E-GEOD-21297 | biostudies-arrayexpress

Deep learning based registration of serial whole-slide histopathology images in different stains.

Not available

S-EPMC10193019 | biostudies-literature

Fluorimetric Mercury Test Strips with Suppressed "Coffee Stains" by a Bio-inspired Fabrication Strategy.

Not available

S-EPMC5095603 | biostudies-literature

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452 Results

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