Stamen - OmicsDI

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Transcriptomics (436)
Unknown (377)
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Arabidopsis thaliana (167)
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Organisms

Salix purpurea (16)
Arabidopsis thaliana (15)
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Repository

biostudies-arrayexpress (414)
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geo (49)
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pride (9)
PAXDB (8)
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iProX (5)
ExpressionAtlas (2)
EVA (1)

Tissue

Stamen (5)
Flower (4)
Root (3)
Carpel (3)
Petiole (2)
Silique (2)
Sepal (2)
Cauline leaf (2)
Hypocotyl (2)
Petal (2)
Young tuber (1)
Tuber peel (1)
Tuber sprout (1)
Tuber cortex (1)
Tuber pith (1)
Mature tuber (1)
Stolon (1)
Whole in vitro plant (1)
Water-stressed leaf (1)
Mixed shoot apical meristem, cotyledon and first leaves (1)
Flower pedicel (1)
Fruit valve (1)
Stem internode (1)
Adult vascular leaf (1)
Stem node (1)
Fruit septum (1)
Rosette leaf (1)
Plant callus (1)
Root tip (1)
Shoot apex (1)

Disease

Progressive skeletal muscle myopathy (1)
Melanoma (1)
Normal (1)
Disease free (1)

Technology Type

Mass spectrometry (13)
Mass Spectrometry (9)
Mass spectrometry assay (7)
Shotgun proteomics (4)
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Na (1)
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To be provided (1)
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Publication Date

2011 (59)
2014 (55)
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2008 (39)
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2007 (18)
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2005 (10)
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2006 (9)
2024 (8)
2018 (7)
2004 (7)
2017 (6)

UNIPROT ID/AC

14332_ARATH (7)
14333_ARATH (7)
14334_ARATH (7)
14335_ARATH (7)
14336_ARATH (7)
14337_ARATH (7)
14338_ARATH (7)
1A112_ARATH (7)
2A5B_ARATH (7)
2AAA_ARATH (7)
2AAB_ARATH (7)
2AAG_ARATH (7)
2AB2A_ARATH (7)
2ABA_ARATH (7)
2ABB_ARATH (7)
3HID1_ARATH (7)
3HIDH_ARATH (7)
4CL1_ARATH (7)
4CLL5_ARATH (7)
4CLL7_ARATH (7)
4CLL9_ARATH (7)
4CLLA_ARATH (7)
5FCL_ARATH (7)
6PGD1_ARATH (7)
6PGD2_ARATH (7)
6PGD3_ARATH (7)
6PGL2_ARATH (7)
6PGL3_ARATH (7)
6PGL5_ARATH (7)
A0A178W0K0_ARATH (7)

CHEBI ID

CHEBI:36090 (3)
CHEBI:18186 (3)
CHEBI:30769 (3)
CHEBI:15864 (2)
CHEBI:28044 (2)
CHEBI:32374 (2)
CHEBI:16704 (2)
CHEBI:16335 (2)
CHEBI:182979 (1)
CHEBI:182976 (1)
CHEBI:182258 (1)
CHEBI:182972 (1)
CHEBI:183019 (1)
CHEBI:160656 (1)
CHEBI:183017 (1)
CHEBI:160800 (1)
CHEBI:166281 (1)
CHEBI:163204 (1)
CHEBI:160635 (1)
CHEBI:183013 (1)
CHEBI:159455 (1)
CHEBI:9577 (1)
CHEBI:183010 (1)
CHEBI:161276 (1)
CHEBI:183004 (1)
CHEBI:163774 (1)
CHEBI:163588 (1)
CHEBI:182999 (1)
CHEBI:182996 (1)
CHEBI:163630 (1)

Metabolite Name

Isoquercitrin (4)
Kaempferol (4)
Rutin (4)
Stearic acid (4)
Pipecolic acid (4)
Ginkgolide B (3)
Chlorogenic acid (3)
Maltol (3)
4-Hydroxycinnamic acid (3)
Umbelliferone (3)
Pipericine (3)
Matairesinol (3)
Naringenin (3)
Homoeriodictyol (3)
Trigonelline (3)
Betaine (3)
Sphingosine (3)
Lumichrome (3)
Phytosphingosine (3)
Piperidine (3)
Astragalin (3)
Aspirin (3)
Apigenin (3)
Genipin (3)
Sebacic acid (3)
Arginine (3)
Adenosine (3)
Raffinose (3)
Palmitic acid (3)
L-Tryptophan (3)

First Public Date

2021 (31)
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2022 (15)
2014 (15)
2024 (13)
2025 (12)
2019 (10)
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2016 (6)
2017 (4)
2018 (3)
2015 (2)
2013 (1)

Study type

Transcription profiling by array (225)
RNA-seq of coding RNA (93)
RNA-seq of non coding RNA (59)
Unknown experiment type (6)
Plant - High-throughput sequencing (6)
ChIP-seq (6)
Methylation profiling by high throughput sequencing (6)
DNA-seq (3)
ChIP-chip by tiling array (2)
Transcription profiling by SAGE (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Ribo-seq (1)
Other (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2014 (73)
2011 (63)
2022 (56)
2015 (47)
2013 (46)
2012 (46)
2010 (41)
2008 (40)
2025 (39)
2021 (38)
2018 (38)
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2016 (36)
2020 (35)
2019 (25)
2024 (24)
2009 (24)
2017 (22)
2007 (20)
2026 (11)
2005 (11)
2006 (8)
2004 (8)
2003 (2)
2002 (2)

Lab affiliation

Department of Plant and Environmental Sciences, Aharoni lab, Weizmann Institute of Science (2)
1College of Horticulture, Shenyang Agricultural University, Shenyang, 11086, Liaoning, China 2Institute of Horticulture Crops, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, Xinjiang, China (1)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China (1)
CGSI - University of Wisconsin Madison. Sussman lab. (1)
Center for Genomic Science Innovation, University of Wisconsin - Madison (1)
TUM (1)
University of Wiscosin - Madison (1)

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Transcriptome comparisons of dimorphic Arthrostemma ciliatum stamen whorls at different developmental stages to find candidate genes causing heteranthery

The experiment was performed to find differentially expressed transcripts/genes between the two stamen types responsible for causing the observed morphological differences. Four different developmental stages suitable for comparisons were identified based on morphological characteristics and flower ...

ORGANISM(S): Arthrostemma ciliatum

2026-06-17 | E-MTAB-16916 | biostudies-arrayexpress

Triticum aestivum strain:cultivar Transcriptome or Gene expression

The pistillody mutant wheat (Triticum aestivum L.) plant HTS-1 exhibits homeotic transformation of stamens into pistils or pistil-like structures. Unlike common wheat varieties, HTS-1 produces three to six pistils per floret, potentially increasing the yield. Thus, HTS-1 is highly valuable in the st...

ORGANISM(S): Triticum aestivum

2014-03-14 | E-MTAB-4469 | biostudies-arrayexpress

Transcription profiling of stamen abscission zone cells from Arabidopsis over five developmental stages from prepollination to organ shed

We conducted transcriptional profiling of laser-captured stamen abscission zone cells over five developmental stages from prepollination to organ shed.

ORGANISM(S): Arabidopsis thaliana

2008-06-15 | E-MEXP-1474 | biostudies-arrayexpress

Transcription profiling of Arabidopsis male-sterile opr3 mutant stamens treated with jasmonate or its precursor, 12-oxophytodienoic acid

In Arabidopsis, jasmonate is required for stamen and pollen maturation. Mutants deficient in jasmonate synthesis, such as opr3, are male-sterile but become fertile when jasmonate is applied to developing flower buds. We have used ATH1 oligonucleotide arrays to follow gene expression in opr3 stamens...

ORGANISM(S): Arabidopsis thaliana

2007-10-04 | E-GEOD-4733 | biostudies-arrayexpress

Gene expression profiling for early rice stamen

Plant organ formation, or organogenesis is the process in which the primordium derived from shoot apical meristem develops into an organ with a given shape and proper function, through a series of cell division and differentiation. To decipher the genetic program underling plant organ formation, we ...

ORGANISM(S): Oryza sativa Japonica Group

2013-12-17 | E-GEOD-53347 | biostudies-arrayexpress

Transcription profiling of Gerbera hybrida flower organs vs a reference pool

Different gerbera hybrida flower organs including pappus bristles, stamen, early and late petal development and flower scape, were compared to a pooled reference sample to determine which genes are abundant for analyzed flower organs. Samples were pooled and three replicants that were independently ...

ORGANISM(S): Gerbera hybrid cultivar

2004-12-31 | E-MEXP-134 | biostudies-arrayexpress

Transcription profiling of Gerbera hybrida flower organs vs a reference pool

ORGANISM(S): Gerbera hybrid cultivar

2004-12-31 | E-MEXP-207 | biostudies-arrayexpress

Transcription profiling of Arabidopsis pollen and stamen with induced DEMETER expression to identify

We used Affymetrix Arabidopsis ATH1 GeneChip to profile RNAs active in wild type columbia (glabrous) and CaMV::DME pollen and stamens. Experiment Overall Design: DME is not active in wild type pollen and stamen. DME was induced in pollen and stamen by a cauliflower mosaic virus promoter (CaMV). RN...

ORGANISM(S): Arabidopsis thaliana

2008-06-16 | E-GEOD-9408 | biostudies-arrayexpress

Barley stamen maturation

Barley stamen transcriptomes at maturation stages W9.25 and W9.35

PRJEB47154 | ENA

OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development.

Not available

S-EPMC9658454 | biostudies-literature

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