Staufen 1 - OmicsDI

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Unknown (49)
Transcriptomics (46)
Proteomics (26)
Genomics (14)
Metabolomics (9)
Other (1)

Organisms

Homo sapiens (31)
Schizophyllum commune H4-8 (26)
Mycobacterium tuberculosis SP7 (26)
Oryza sativa Japonica Group (26)
Eriocheir sinensis (26)
Candidatus Endoriftia persephonae (26)
Mycobacterium tuberculosis SP10 (26)
Mycobacterium tuberculosis SP13 (26)
Mycobacterium tuberculosis SP22 (26)
Enterobacter ludwigii (26)
Chlamydomonas reinhardtii (26)
Lama (26)
Pyricularia oryzae P131 (26)
Enterococcus mundtii CRL35 (26)
Pongo pygmaeus (26)
Oncorhynchus tshawytscha (26)
Pseudomonas canadensis (26)
Strongylocentrotus purpuratus (26)
Influenza A virus (A/California/04/2009(H1N1)) (26)
Salmonella enterica subsp. enterica serovar Typhimurium (26)
Homo (26)
Bradyrhizobium diazoefficiens (26)
Streptococcus pyogenes STAB901 (26)
Pseudomonas aeruginosa PAO1H2O (26)
Mus musculus (7)
Rattus norvegicus (5)
Caenorhabditis elegans (2)
Saccharum officinarum (1)
Gallus gallus (1)
Drosophila melanogaster (1)

Organisms

Homo sapiens (9)
Drosophila melanogaster (1)
Caenorhabditis elegans (1)

Repository

biostudies-arrayexpress (39)
pride (26)
ENA (13)
geo (9)
MetaboLights (9)

Tissue

Cell culture (5)
Brain (4)
Epithelial cell (4)
Fibroblast (2)
Skin (2)
Whole body (2)
Meningioma cell (1)
Lens (1)
Skin of leg (1)
Head (1)
Neuron of cerebral cortex (1)
Extracellular exosome (1)
Astrocyte (1)
Melanocyte (1)
Primary cell (1)
Dendritic cell (1)
Skeletal muscle (1)
Permanent cell line cell (1)
Plant cell (1)
T cell (1)
Ovary (1)
Placenta (1)
Heart (1)
Kidney (1)
Keratinocyte (1)
Macrophage (1)

Disease

Normal (2)
Limited scleroderma (1)
Idiopathic dilated cardiomyopathy (1)
High grade glioma (1)
Polycystic kidney disease (1)
Myeloid leukemia (1)
FTDALS1 (1)
Multiple sclerosis (1)
Skin cancer (1)
Melanoma (1)
Amyotrophic lateral sclerosis (1)
Pancreatic ductal adenocarcinoma (1)
Meningioma (1)
Disease free (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (18)
Mass spectrometry (8)
Bottom-up proteomics (8)
Data-dependent acquisition (2)
Mass spectrometry assay (1)
Gel-based experiment (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (3)
SYNAPT HDMS (Waters) (2)
Liquid Chromatography MS - negative - reverse phase (2)
Non (1)
None (1)
Illumina (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
LECO Pegasus 4D GCxGC-TOF-MS (1)
Gas Chromatography MS - positive - high-polarity (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (10)
2016 (7)
2015 (7)
2023 (6)
2020 (6)
2012 (5)
2008 (5)
2013 (4)
2010 (4)
2024 (3)
2017 (3)
2014 (3)
2018 (3)
2022 (3)
2019 (3)
2011 (2)
2009 (2)
2007 (2)
2026 (2)
2021 (2)
2006 (1)

CHEBI ID

CHEBI:38760 (2)
CHEBI:132905 (2)
CHEBI:53177 (2)
CHEBI:89263 (2)
CHEBI:72775 (2)
CHEBI:36740 (2)
CHEBI:9457 (2)
CHEBI:35998 (2)
CHEBI:28897 (2)
CHEBI:27386 (2)
CHEBI:15688 (2)
CHEBI:15384 (2)
CHEBI:28591 (2)
CHEBI:49000 (2)
CHEBI:16151 (2)
CHEBI:28054 (2)
CHEBI:28631 (2)
CHEBI:17987 (2)
CHEBI:4917 (2)
CHEBI:55334 (1)
CHEBI:136935 (1)
CHEBI:136948 (1)
CHEBI:27842 (1)
CHEBI:136946 (1)
CHEBI:136950 (1)
CHEBI:136954 (1)
CHEBI:136951 (1)
CHEBI:136926 (1)
CHEBI:136953 (1)
CHEBI:136955 (1)

Metabolite Name

2-pyrrolidinone (2)
2-piperidinone (2)
UDP-N-acetylgalactosamine (1)
N2-acetyllysine/N6-acetyllysine (1)
Mannose-1-phosphate (1)
Daidzin (1)
Pelargonidin 3-O-rutinoside-5-O-beta-D-glucoside (anthocyanin) (1)
1,2-bis-O-Sinapoyl-beta-D-glucoside (1)
Delphinidin 3-O-(6''-O-malonyl)-β-glucoside (anthocyanin) (1)
Quercetin 3-β-D-glucoside (flavonoid) (1)
Coumaric acid-β-D-glucoside (1)
2,5-Dihydroxybenzoate 2-O-β-D-glucoside (1)
Cinnamoyl beta-D-glucoside (1)
8-(Methylthio)octylisothiocyanate (1)
4-Methoxy-3-indolylmethylamine (1)
Gluconasturtiin (2-phenethyl glucosinolate) (1)
Glucotropaeolin (benzyl glucosinolate) (1)
Glucohirsutin (methylsulfinyloctyl glucosinolate) (1)
Glucoibarin (methylsulfinylheptyl glucosinolate) (1)
Glucohesperin (methylsulfinylhexyl glucosinolate) (1)
Glucoalyssin (methylsulfinylpentyl glucosinolate) (1)
Glucolesquerellin (6-methylthiohexyl glucosinolate) (1)
Glucoraphanin (methylsulfinylbutyl glucosinolate) (1)
Glucoberteroin (methylthiopentyl glucosinolate) (1)
Progoitrin (2-hydroxy-3-butenyl glucosinolate) (1)
Sinigrin (propenyl glucosinolate) (1)
Gluconapin (butenyl glucosinolate) (1)
9-Methylthiononylhydroximoyl-L-cysteine (1)
2-Oxo-9-methylthiononanoate (1)
2-Oxo-6-methylthiohexanoate (1)

First Public Date

2020 (4)
2014 (3)
2025 (2)
2023 (1)
2019 (1)
2016 (1)
2013 (1)

Study type

Transcription profiling by array (25)
RNA-seq of coding RNA (4)
ChIP-chip by array (2)
ChIP-chip by tiling array (1)
Translation profiling (1)
RNAi profiling by array (1)
CLIP-seq (1)
Ribo-seq (1)
Other (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (9)
2014 (8)
2023 (5)
2016 (5)
2013 (5)
2012 (5)
2008 (5)
2021 (5)
2011 (4)
2010 (4)
2022 (4)
2020 (4)
2019 (4)
2025 (3)
2006 (3)
2024 (2)
2017 (2)
2009 (2)
2007 (2)
2018 (2)
2026 (1)
2005 (1)
2004 (1)
2003 (1)
2000 (1)

Lab affiliation

Laboratory of Experimental Hematology, Vaccine and Infectious Disease Institute (Vaxinfectio), University of Antwerp, 2610 Wilrijk, Belgium (1)
Dr Michal BASSANI-STERNBERG ¬ Group leader Laboratory Hi-TIDe: Immunopeptidomics Head of clinical Mass spectrometry unit Center of experimental therapeutics Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Biopôle 3 Chemin des Boveresses 155, CH-1066 Lausanne (1)
Department de biochimie et medecine moleculaire, Universite de Montreal (1)
SIGNATOPE GmbH, Markwiesenstraße 55, 72770 Reutlingen, Germany (1)
Department of Innovative Technologies in Medicine & Dentistry, University of "G. d'Annunzio" of Chieti-Pescara, Chieti, Italy (1)
Dept. Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried (near Munich) Germany (1)
University of Namur Namur Research Institute for Life Sciences (Narilis) Laboratory of Cellular Biochemistry and Biology (URBC) (1)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (lab head) (1)
Group leader Laboratory Hi-TIDe: Immunopeptidomics Head of clinical Mass spectrometry unit Center of experimental therapeutics Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Biopôle 3 Chemin des Boveresses 155, CH-1066 Lausanne (1)
Department of Innovative Technologies in Medicine and Dentistry,University “G. d’Annunzio” of Chieti-Pescara, Italy (1)
Department of Science, "G. d'Annunzio" University of Chieti-Pescara, 66100 Chieti, Italy (1)
Dept. of Pediatrics, Medical University of Wien, Austria (1)
Department of Pharmacy, "G. d'Annunzio" University of Chieti-Pescara, 66100 Chieti, Italy (1)
Waters Lab, School of Biotechnology and Biomolecular Sciences, Faculty of Science, UNSW Australia, Australia (1)
Department of Physiology in the School of Medical Sciences, School of Biological Sciences, University of Auckland, Auckland, New Zealand (1)
University Hospital Hradec Kralove (1)
Institute of Cell Biology University of Bern (1)
University of Aberdeen (1)
German Cancer Reseach Center (DKFZ) (1)
ETH Zurich, Department of Biology, Institute of Molecular Health Sciences (1)
DZNE: German center for Neurodegenerative Diseases, Munich, https://www.dzne.de/index.php?id=105&L=1 (1)
IBCH RAS (1)
Department of Science, University of Chieti, Italy (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Université de Montréal (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (1)

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RIP-Chip of endogenous Staufen and GFP-tagged Staufen from 0-3 hour Drosophila embryos

Staufen-associated mRNAs were identified in early Drosophila embryos by RNA-co-immunoprecipitation followed by microarray analysis (RIP-Chip), using two complementary approaches: RIP-Chip from wild-type embryos using a synthetic anti-Staufen antibody, and RIP-Chip from transgenic GFP-Staufen-express...

ORGANISM(S): Drosophila melanogaster

2013-09-05 | E-GEOD-43418 | biostudies-arrayexpress

Characterization of Staufen 1 ribonucleoprotein complexes.

Not available

S-EPMC1134106 | biostudies-literature

Encapsidation of Staufen-2 Enhances Infectivity of HIV-1.

Not available

S-EPMC8703407 | biostudies-literature

Barentsz, a new component of the Staufen-containing ribonucleoprotein particles in mammalian cells, interacts with Staufen in an RNA-dependent manner.

Not available

S-EPMC6741274 | biostudies-literature

hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.

Not available

S-EPMC4376666 | biostudies-literature

Drosophila melanogaster

RIP-Chip of endogenous Staufen and GFP-tagged Staufen from 0-3 hour Drosophila embryos

PRJNA186029 | ENA

Staufen Negatively Modulates MicroRNA Activity in Caenorhabditis elegans

The double-stranded RNA-binding protein Staufen has been implicated in various posttranscriptional gene regulatory processes. Here, we demonstrate that the Caenorhabditis elegans homolog of Staufen, STAU-1, functionally interacts with microRNAs. Loss-of-function mutations of stau-1 significantly sup...

ORGANISM(S): Caenorhabditis elegans

2016-03-16 | GSE79217 | GEO

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity.

Not available

S-EPMC3814352 | biostudies-literature

Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation.

Not available

S-EPMC305677 | biostudies-literature

Staufen Negatively Modulates MicroRNA Activity in Caenorhabditis elegans.

Not available

S-EPMC4856075 | biostudies-literature