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TranscriptomicsGene expression effects in Caenorhabditis elegans strains of feeding on Erwinia rhapontici or Escherichia coli
Diet can have a strong impact on development, to test this effect the strains N2, CB4856, three strains from Orsay (JU1581, JU1944, and JU1949), and three strains from Santeuil (JU1921, JU1930, and JU1932) were grown on two different food-sources. These sources were the standard lab food, Escherichi...
ORGANISM(S): Caenorhabditis elegans 
2019-07-12 | E-MTAB-8129 | biostudies-arrayexpress
TranscriptomicsTime series experiment on L4 stage of Caenorhabditis elegans N2
This experiment investigates the transcriptional effect of age in the N2 strain of Caenorhabditis elegans during the L4 stage. The goal is to identify genes that show dynamic gene-expression patterns over time. We grew N2 populations over the course of 44 to 58 hours at 20 degrees Celsius, independe...
ORGANISM(S): Caenorhabditis elegans 
2018-07-24 | E-MTAB-7019 | biostudies-arrayexpress
TranscriptomicsMicroarray from roots of Arabidopsis Col-0 and knock-down UPL3, infected and non-infected with Heterodera schachtii
In this experiment we evaluate the transcriptional response to beet cyst nematode infection in wild-type (Col-0) and a upl3 knocked-down Arabidopsis thaliana. The data indicates that the upl3 knock-down alone does not induce a strong transcriptional regulation in the plant. However, the interaction...
ORGANISM(S): Arabidopsis thaliana 
2019-10-03 | E-MTAB-7968 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Arabidopsis thaliana Col-0 and opr2-1 mutants over four timepoints and (mock)infection with Meloidogyne incognita
We compared the gene expression of wild-type Col-0 and a T-DNA mutant SALK_116381C (opr2-1). We either infected or mock-infected the plants with the root knot nematode Meloidogyne incognita and measured the root transcriptome after 0, 1, 4, and 7 days post infection using RNA-seq. The aim of the exp...
ORGANISM(S): Arabidopsis thaliana 
2022-12-24 | E-MTAB-11583 | biostudies-arrayexpress
TranscriptomicsTime series of gene expression profiles from C. elegans exposed to heat-stress and during subsequent recovery
This data set provides insight into the temporal dynamics of gene expression changes during heat-stress (at 35C) and during subsequent recovery (at 20C) in Caenorhabditis elegans. Age synchronized C. elegans CB4856 hermaphrodite populations were exposed to heat stress (35C) for 0h, 0.5h, 1h, 2h, 4h,...
ORGANISM(S): Caenorhabditis elegans 
2019-09-30 | E-MTAB-7007 | biostudies-arrayexpress
TranscriptomicsTime series of gene expression profiles describing the temporal response to prolonged heat stress in C. elegans.
This experiment broadens our understanding of the temporal dynamics underlying the transcriptional response to heat stress. Using C. elegans hermaphrodite N2 populations, we have created a high-resolution time series of gene expression profiles taken at different time points during prolonged heat st...
ORGANISM(S): Caenorhabditis elegans 
2017-05-17 | E-MTAB-5753 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Meloidogyne chitwoodi: NWE-Mc31
Eggs and juveniles of NWE-Mc31 from Meloidogyne chitwoodi were collected and total RNA was isolated as described in the sample collection protocol. The quality of both RNA isolations was RIN 10 (RNA Integrity Number). mRNA sequences were generated using the TruSeq RNA stranded polyA protocol of Useq...
ORGANISM(S): Meloidogyne chitwoodi 
2025-01-13 | E-MTAB-14756 | biostudies-arrayexpress
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