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TranscriptomicsNovel genes in Sitka spruce associated with wood density identified from global transcriptomic analysis
The current study uses a transcriptomic approach to identify genes associated with differences in wood density, that are likely to be of value as candidate genes in Sitka breeding programmes for improved wood density. Following extensive wood density analysis from a Sitka spruce (Picea sitchensis (B...
ORGANISM(S): Picea sitchensis 
2010-05-07 | E-GEOD-18579 | biostudies-arrayexpress
TranscriptomicsHybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet2
We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to methyl jasmonate treatment over a 24 hour time course. Experiments were conducted using clonal trees under greenhouse conditions at the University of British Columbia. We used the 15.5K poplar...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-12-30 | E-GEOD-14039 | biostudies-arrayexpress
TranscriptomicsGene expression timecourse: SoxN homozygous mutant embryos vs SoxN heterozygous mutant embryos.
Timecourse of gene expression changes in Drosophila SoxN homozygous mutant embryos compared with their heterozygous siblings, from stage 7 to 13 of embryonic development. Five time points: stage 7-8, stage 9, stage 10, stage 11 and stage 12-13. Four biological replicates per time point. Two conditio...
ORGANISM(S): Drosophila melanogaster 
2014-04-23 | E-GEOD-47227 | biostudies-arrayexpress
TranscriptomicsAnalysis of SoxNeuro gene expression changes, genome-wide binding, and comparison of SoxNeuro and Dichaete binding profiles in wild type and mutant embryos
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Drosophila melanogaster 
2014-04-23 | E-GEOD-47338 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Drosophila infected with Wolbachia
The Drosophila-Wolbachia system is being used to study the molecular nature of the interactions between a host and a symbiont. This system offers a unique opportunity for such a study since the Drosophila genome sequence is available, several Wolbachi genomes will also be available soon and there ar...
ORGANISM(S): Drosophila melanogaster 
2004-05-07 | E-FLYC-3 | biostudies-arrayexpress
TranscriptomicsHybrid_Poplar_H11-11_Leaves_Local_Stress_Response_DataSet3
We investigated the transcriptional response of hybrid poplar (Populus trichocarpa x deltoides) leaves to a variety of stress treatments (insect feeding by Malacosoma disstria larvae, mechanical wounding, wounding plus the application of insect oral secretions, and methyl jasmonate spray) over a 24 ...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2010-09-09 | E-GEOD-14081 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis leaf blades sampled throughout development from meristematic to expanding to mature state at 10 different timepoints
Arabidopsis leaf blades were sampled throughout development from meristematic through expanding to mature state at 10 different timepoints. The transcript data can be compared to a kinematic and flowcytometric characterisation of the system.
ORGANISM(S): Arabidopsis thaliana 
2004-09-20 | E-MEXP-144 | biostudies-arrayexpress
TranscriptomicsInterior spruce_Bark_Leptographium abietinum_inoculation
Using 21K spruce microarray (that contains 21.8 thousand unique transcripts) we performed analysis of the transcriptome response of interior spruce (Picea glauca x engelmannii) inoculated with the spruce beetle (Dendroctonus rufipennis) vectored blue stain fungal pathogen Leptographium abietinum or ...
ORGANISM(S): Picea engelmannii x Picea glauca 
2012-12-01 | E-GEOD-23678 | biostudies-arrayexpress
GenomicsICGC_PACA-AU_20160429 - samples
Additional sequencing data for 173 donors in EGAS00001000154, a study of Pancreatic Ductal Adenocarcinoma. WGS libraries were used for high-cellularity cases, WXS sequencing to high depth on low-cellularity cases. HiSeq 2xxx platform was used in all cases. The analysis files associated with this dat...
EGAD00001002192 | EGA
TranscriptomicsComparision of time-course gene expression in wild-type Drosophila and an Alzheimers disease model
The strongest risk factor for developing Alzheimer's Disease (AD) is age. Here, we study the relationship between ageing and AD using a systems biology approach that employs a Drosophila (fruitfly) model of AD in which the flies overexpress the human AM-NM-242 peptide. We identified 712 genes that a...
ORGANISM(S): Drosophila melanogaster 
2013-12-16 | E-GEOD-48681 | biostudies-arrayexpress
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