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no omics definedTranscription profiling of 57 human bladder carcinoma samples.
Transcriptome analysis of 57 bladder carcinomas on Affymetrix HG-U95A and HG-U95Av2 microarrays
ORGANISM(S): Homo sapiens 
2006-11-10 | E-TABM-147 | biostudies-arrayexpress
TranscriptomicsSNP array data from the Cancer Cell Line Encyclopedia (CCLE)
The Cancer Cell Line Encyclopedia (CCLE) project is a collaboration between the Broad Institute, the Novartis Institutes for Biomedical Research and the Genomics Novartis Foundation to conduct a detailed genetic and pharmacologic characterization of a large panel of human cancer models It consists o...
ORGANISM(S): Homo sapiens 
2012-03-20 | E-GEOD-36138 | biostudies-arrayexpress
TranscriptomicsSNP and Expression data from the Cancer Cell Line Encyclopedia (CCLE)
This SuperSeries is composed of the following subset Series: GSE36133: Expression data from the Cancer Cell Line Encyclopedia (CCLE) GSE36138: SNP array data from the Cancer Cell Line Encyclopedia (CCLE) Refer to individual Series
ORGANISM(S): Homo sapiens 
2012-03-20 | E-GEOD-36139 | biostudies-arrayexpress
TranscriptomicsGene expression signature overlap between shETV1 and BRD32048 in LNCaP and SK-MEL-28
Identification of BRD32048 as an inhibitor of ETV1 oncogenic transcription factor. This compound was indentified by small molecule mcroarray (a binding assay). It was able to consistently inhibit an ETV1-dependent MMP1-driven luciferase signal. Its direct binding was validated by Suface plasmon reso...
ORGANISM(S): Homo sapiens 
2013-11-07 | E-GEOD-52154 | biostudies-arrayexpress
TranscriptomicsNuclear Factor I/B is an Oncogene in Small Cell Lung Cancer
Small cell lung cancer (SCLC) is an aggressive cancer often diagnosed only after it has metastasized to distant sites (Meuwissen and Berns 2005; Cooper and Spiro 2006). Despite the need to better understand this disease, SCLC remains poorly characterized at the molecular and genomic levels (Forgacs ...
ORGANISM(S): Mus musculus 
2011-12-08 | E-GEOD-29533 | biostudies-arrayexpress
GenomicsGenomic analyses of gynecologic carcinosarcomas reveal frequent mutations in chromatin remodeling genes
Malignant Mixed Müllerian Tumors, also known as carcinosarcomas, are rare tumors of gynecological origin. Here we perform whole exome analyses of 22 tumors using massively parallel sequencing to determine the mutational landscape of this tumor type. On average, we identify 43 mutations per tumor, ...
EGAS00001000941 | EGA
Genomicsena-DATASET-JHM-25-08-2014-21:08:20:597-833 - samples
Whole exome sequencing data from tumor and normal samples from carcinosarcoma (malignant mixed mullerian tumor) patients
EGAD00001000987 | EGA
GenomicsCarcinosarcoma Data Access Committee
Data Access Committee EGAC00001000234
EGAC00001000234 | EGA
GenomicsMelanoma Genome Sequencing Project

Melanoma is the most prevalent cause of skin cancer morbidity and mortality. In order to characterize the full range of somatic mutations that may drive the growth of melanoma, we are sequencing tumor and normal DNA from a set of roughly 150 melanomas. For the majority of samples (approximately 9...

phs000452.v1.p1 | EGA
GenomicsWhole Genomic Sequencing of Nine Primary Colorectal Adenocarcinoma Tumor/Germline Pairs

This study was the first-known effort to complete the complete genome sequencing of primary colorectal adenocarcinomas and the matched germline genome. Nine colorectal adenocarcinomas selected on the basis of having chromosomal instability were subjected to 'shotgun' Illumina sequencing w...

phs000374.v1.p1 | EGA
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