Streptomyces coelicolor

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Unknown (759)
Genomics (324)
Transcriptomics (209)
Proteomics (42)
Metabolomics (20)
Models (4)
Other (3)

Organisms

Streptomyces coelicolor (155)
Streptomyces coelicolor A3(2) (75)
Streptomyces lividans (7)
Streptomyces venezuelae (4)
Streptomyces rimosus (2)
Streptomyces clavuligerus (2)
Corynebacterium glutamicum (2)
Escherichia coli BW25113 (2)
Bacillus subtilis (2)
Escherichia coli K-12 (2)
Streptomyces tsukubensis NRRL18488 (2)
Streptomyces griseus subsp. griseus NBRC 13350 (1)
Enterococcus faecalis OG1RF (1)
Mycobacterium tuberculosis H37Rv (1)
Streptomyces maritimus (1)
Streptomyces microflavus (1)
Streptomyces fradiae (1)
Streptomyces antibioticus (1)
Streptomyces tanashiensis (1)
Streptomyces exfoliatus (1)
Streptantibioticus cattleyicolor (1)
Streptosporangium roseum (1)
Kitasatospora aureofaciens (1)
Streptomyces virginiae (1)
Streptomyces rochei (1)
Streptomyces bikiniensis (1)
Actinoplanes siamensis (1)
Streptomyces griseus (1)
Corynebacterium glutamicum ATCC 13032 (1)
Streptomyces avermitilis (1)

Organisms

Streptomyces coelicolor (169)
Streptomyces coelicolor A3(2) (68)
Streptomyces tsukubensis NRRL18488 (2)
Streptomyces (2)
Streptomyces lividans 1326 (1)
Streptomyces sp. 6(4) (1)
Streptomyces lividans (1)
Corynebacterium glutamicum (1)
Bacillus subtilis (1)
Staphylococcus aureus (1)

Repository

ENA (303)
biostudies-arrayexpress (122)
geo (110)
pride (29)
GNPS (17)
MassIVE (9)
BioModels (4)
MetaboLights (3)
PAXDB (3)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (8)
Cell line cell (2)
Whole body (2)
Spore (1)
Prokaryotic cell (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (16)
Bottom-up proteomics (9)
HDMSE (3)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Gel-based experiment (2)
Mass spectrometry (1)
SWATH MS (1)
Data-independent acquisition (1)

Instrument Platform

LTQ FT (5)
Illumina HiSeq 2000 (4)
6310 Ion Trap LC/MS (4)
Q Exactive (4)
Illumina MiSeq (3)
NextSeq 500 (2)
Diones UltiMate 3000 (2)
LTQ Orbitrap XL (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
GeneChip Scanner 3000 [Affymetrix] (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
MicrOTOF-Q (1)
Orbitrap ID-X (1)
6545 Q-TOF LC/MS (1)
MicrOTOF-Q II (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
Synapt G2-S MS (1)
LC/MSD Ultra Trap System XCT6330 (1)
Agilent 1200 series (1)
Agilent Technologies (1)
TimsTOF Pro (1)
MaXis (1)
Orbitrap Fusion (1)
Autoflex speed smartbeam (1)

Publication Date

2010 (29)
2014 (25)
2012 (21)
2013 (20)
2005 (19)
2020 (18)
2007 (17)
2018 (15)
2011 (15)
2021 (12)
2019 (12)
2025 (12)
2023 (11)
2022 (11)
2016 (11)
2024 (9)
2015 (9)
2017 (7)
2009 (7)
2026 (7)
2006 (5)
2008 (3)

UNIPROT ID/AC

CSEC_STRCO (3)
Q9RD03_STRCO (3)
Q9S2B3_STRCO (3)
Q9EX14_STRCO (3)
O86590_STRCO (3)
Q93JE5_STRCO (3)
O86748_STRCO (3)
Q9S280_STRCO (3)
Q9K3Q8_STRCO (3)
O69961_STRCO (3)
Q9FBZ3_STRCO (3)
Q9RK21_STRCO (3)
Q93IZ2_STRCO (3)
O86689_STRCO (3)
Q9L1D1_STRCO (3)
Q9RDK2_STRCO (3)
Q9KYR1_STRCO (3)
Q9KZ31_STRCO (3)
Q9S2V9_STRCO (3)
Q9RKF7_STRCO (3)
Q9FCE6_STRCO (3)
Q9ADJ5_STRCO (3)
Q93RW6_STRCO (3)
Q9XA23_STRCO (3)
Q9ZBT4_STRCO (3)
Q9K4C2_STRCO (3)
Q9L2J1_STRCO (3)
Q9RKW3_STRCO (3)
Q9KYA5_STRCO (3)
Q9KY72_STRCO (3)

CHEBI ID

CHEBI:2456 (1)

Metabolite Name

5-oxoprolinate (1)
Propane-1,2-diol (1)
Ascorbate (1)
2-hydroxybutyrate (1)
2-hydroxy-3-methylbutyrate (1)
S-adenosyl-L-homocysteine (1)
Glutathione disulfide (1)
O-acetyl-L-carnitine (1)
Uric acid (1)
Benzoic acid (1)
3-hydroxykynurenine (1)
Myo-inositol (1)
4-methyl-2-oxopentanoic acid (1)
Isobutyrate (1)
Aspartic acid (1)
Formate (1)
Glycine betaine (1)
Acetate (1)
Cystathionine (1)
Creatinine (1)
Creatine (1)
3-hydroxybutyrate (1)
Citric acid (1)
NAD (1)
GMP (1)
Uridine (1)
CMP (1)
Cytidine (1)
Inosine (1)
Hypoxanthine (1)

First Public Date

2019 (78)
2014 (51)
2025 (47)
2018 (37)
2020 (18)
2023 (12)
2026 (11)
2024 (11)
2021 (11)
2013 (9)
2022 (8)
2017 (4)
2016 (3)
2015 (3)

Modelling Approach

Constraint-based model (4)

Lab affiliation

Institute of Biology Leiden, Leiden University (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
Biological Chemistry (2)
Division of Physical Chemistry, Institute Ruđer Bošković, Zagreb, Croatia (1)
Laboratory of Antibiotic Resistance and Microbial Metabolomics, Kamenik & Balikova Novotna Lab, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)
Actinobacteria Laboratory, PROIMI-CONICET, Tucuman-Argentina (1)
Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands (1)
Laboratory of Molecular Microbiology and Biotechnology, STEBICEF Department, University of Palermo, 90128 Palermo, Italy (1)
Institute of Plant Physiology and Ecology, Shanghai, China (1)
Department Molecular Microbiology John Innes Centre Norwich, UK (1)
School of Biological Sciences, Seoul National University, Seoul, 08826, South Korea (1)
Prof Ole N Jensen Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK - 5230 Odense M, Denmark ( lab head ) (1)
Laboratory of Mass Spectometry (1)
School of Medical Sciences (1)
Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France. (1)
Laboratory of Molecular Microbiology and Biotechnology, STEBICEF Department, University of 8 Palermo, 90128 Palermo, Italy. (1)
Dept. Molecular Microbiology John Innes Centre Norwich Research Park Norwich, UK (1)
Institute of Organic Chemistry and Biochemistry Czech Academy of Sciences (1)
Micalis Institute, INRA, PAPPSO, Université Paris-Saclay, Jouy-en-Josas, France. (1)
Instituto de Biología Funcional y Genómica (IBFG) Lab 1.9: Regulación génica en Streptomyces C/ Zacarías González, 2, 37007, Salamanca (Spain) phone: +34 923 29 48 89 ext. 4889 (1)
Institute of Microbiology of the CAS; BIOCEV, Průmyslová 595, Vestec, Czech Republic (1)
Institute of Organic Chemistry and Biochemistry (1)
Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China. (1)
Synthetic Genetic Circuits, Department of Biology, Technical University Darmstadt, Darmstadt, Germany (1)
Department of Biochemistry University of Cambridge (1)
CAS Center for Excellence in Molecular Plant Sciences (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (2)

Classification

bacteria (2)

Modification

15.994915 (2)
57.021464 (2)
42.010565 (1)

Study type

Transcription profiling by array (86)
RNA-seq of coding RNA (14)
Unknown experiment type (8)
ChIP-chip by array (4)
ChIP-seq (4)
Comparative genomic hybridization by array (3)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
RIP-seq (1)

Release Date

2013 (53)
2022 (51)
2014 (51)
2018 (50)
2012 (50)
2023 (47)
2010 (45)
2016 (43)
2021 (42)
2011 (42)
2024 (39)
2020 (39)
2015 (36)
2019 (35)
2008 (33)
2017 (30)
2009 (30)
2025 (28)
2005 (26)
2006 (19)
2007 (18)
2003 (17)
2000 (13)
2001 (9)
1998 (9)
2026 (7)
2004 (7)
2002 (7)
1999 (5)

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Metabolomic profiling of Streptomyces coelicolor overexpressing the alpha subunit of acyl-CoA carboxylase

This study contains metabolomics data from Streptomyces coelicolor M145 overexpressing the alpha subunit of acyl-CoA carboxylase. The data were generated to investigate metabolite changes associated with alpha subunit overexpression and to explore its effects on primary metabolism, acyl-CoA precurso...

2026-05-06 | MTBLS14439 | MetaboLights

The genome of Streptomyces rimosus shows a novel structure compared to other Streptomyces

This study compared the genome of Streptomyces rimosus rimosus against that of Streptomyces coelicolor. It also compared 4 strains with changes in oxytetracycline production and derived from G7, the type strain, against G7. Duplicate samples, each replicate may be found in the corresponding suppleme...

ORGANISM(S): Streptomyces rimosus

2010-05-26 | E-GEOD-10126 | biostudies-arrayexpress

S. coelicolor YSK4425 Time-course Study in R5- medium (Culture#2)

Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this stud...

ORGANISM(S): Streptomyces coelicolor

2010-06-10 | E-GEOD-8160 | biostudies-arrayexpress

Global gene transcription analysis in response to changes in chromosome supercoiling in Streptomyces coelicolor

We address the transcriptional response to both novobiocin-induced rapid chromosome relaxation or long-term topological imbalance, both increased and decreased supercoiling, in environmental antibiotic-producing bacteria belonging to the Streptomyces genus.

ORGANISM(S): Streptomyces coelicolor A3(2)

2019-06-22 | E-MTAB-8071 | biostudies-arrayexpress

S. coelicolor M752 SMM medium time course study

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-22398 | biostudies-arrayexpress

Identification by ChIP-Seq of the binding sites of the extracytoplasmic function (ECF) sigma factor SigE in the genome of Streptomyces coelicolor A3(2) M600.

SigE is a sigma factor found in Streptomyces species and is the key regulator of cell envelope stress response in Streptomyces coelicolor. This ChIP-Seq experiment was carried out to determine the binding sites of SigE under conditions of cell envelope stress induced by 10 ug / ml vancomycin for 30...

ORGANISM(S): Streptomyces coelicolor A3(2)

2019-04-24 | E-MTAB-7827 | biostudies-arrayexpress

S. coelicolor Wild Type R5- Medium Time-course Study

Many biological processes are intrinsically dynamic, incurring profound changes at both molecular and physiological levels. Systems analyses of such processes incorporating large-scale transcriptome or proteome profiling can be quite revealing. Although consistency between mRNA and proteins is often...

ORGANISM(S): Streptomyces coelicolor

2010-06-11 | E-GEOD-7172 | biostudies-arrayexpress

S. coelicolor YSK3654 R5- medium time course study

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21807 | biostudies-arrayexpress

S. coelicolor WL6268 R5- medium time course study

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21808 | biostudies-arrayexpress

S. coelicolor LY2517 R5- medium time course study

This SuperSeries is composed of the following subset Series: GSE21809: S. coelicolor LY2517 R5- medium time course study (Culture # 1) GSE21810: S. coelicolor LY2517 R5- medium time course study (Culture # 2) Refer to individual Series

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21811 | biostudies-arrayexpress

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