Subgroup - OmicsDI

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Unknown (46529)
Genomics (1450)
Transcriptomics (1019)
Proteomics (178)
Methylation profiling (60)
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Organisms

Homo sapiens (1090)
Mus musculus (204)
Trypanosoma brucei (45)
Arabidopsis thaliana (33)
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Oryza sativa (11)
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environmental samples (2)
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Vibrio parahaemolyticus RIMD 2210633 (1)
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Tomato yellow leaf curl China virus (1)
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Helicobacter pylori 26695 (1)
Acetobacter aceti NBRC 14818 (1)
Burkholderia thailandensis (1)
Trypanosoma brucei gambiense (1)
Drosophila (1)

Organisms

Homo sapiens (602)
Mus musculus (135)
Bacillus anthracis (20)
Rattus norvegicus (10)
Arabidopsis thaliana (8)
Gallus gallus (6)
Drosophila (5)
Oryza sativa (5)
Gardnerella vaginalis (4)
Danio rerio (4)
Oryza sativa tropical japonica subgroup (3)
Vitis vinifera (3)
Saccharomyces cerevisiae (3)
Caenorhabditis elegans (3)
Drosophila melanogaster (3)
Oryza sativa aus subgroup (2)
Drosophila simulans (2)
Ralstonia pseudosolanacearum (2)
Musa acuminata AAA Group (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Drosophila ananassae (2)
Viruses (2)
Bos taurus (2)
Capra hircus (2)
Sus scrofa (2)
Escherichia coli (2)
Pseudomonas sp. MPFS (1)
Escherichia coli B171 (1)
Clonostachys rosea f. rosea IK726 (1)
Phaeobacter inhibens DSM 16374 (1)

Repository

ENA (1138)
geo (769)
biostudies-arrayexpress (489)
EGA (162)
pride (119)
MetaboLights (36)
iProX (26)
MassIVE (18)
jPOST (7)
dbGaP (6)
FAIRDOMHub (2)
GPMDB (2)
PAXDB (2)

Tissue

Cell culture (14)
Brain (11)
Blood serum (9)
Epithelial cell (8)
B cell (5)
Blood plasma (5)
Cell suspension culture (4)
Plant cell (4)
Blood (3)
Blood cell (3)
Bone marrow (3)
Root (3)
Stem cell (3)
Adipose tissue (2)
B-cell chronic lymphocytic leukemia cell (2)
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Colon (2)
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Heart (2)
Kidney (2)
Leaf (2)
Liver (2)
Shoot (2)
Whole body (2)
Abdominal adipose tissue (1)
Anal canal (1)
HeLa cell (1)
JURKAT cell (1)
Schwann cell (1)
T cell (1)

Disease

Colorectal Neoplasms (16)
Neuroblastoma (2)
Colorectal cancer (2)
CLL (1)
Monoclonal gammopathy of undetermined significance (MGUS) (1)
Malignant testicular germ cell tumor (1)
Normal renal cortex (1)
Alpha-1 antitrypsin deficiency-related emphysema (1)
Ulcerative colitis (1)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Precursor T lymphoblastic leukemia (1)
Benign meningioma (1)
"hepatocellular adenoma" (1)
Pancreatic cancer (1)
Acute lymphoblastic leukemia (1)
Serous ovarian cancer (1)
Head and neck squamous cell carcinoma (1)
Chronic myelogenous leukemia (1)
Diverticulosis (1)
Glioblastoma (1)
Colorectal adenocarcinoma (1)
Central nervous system cancer (1)
Adenocarcinoma of colon stage II (1)
Adenoma (1)
Breast Neoplasms (1)
Cachexia (1)
Intestinal Neoplasms (1)
Lung cancer, colorectal cancer, liver cancer, gastric cancer, breast cancer, esophageal cancer, panc (1)
Neoplasm Metastasis (1)
Neoplasms (1)

Technology Type

Mass Spectrometry (119)
Shotgun proteomics (65)
Mass spectrometry (24)
Bottom-up proteomics (23)
Mass spectrometry assay (10)
Data-dependent acquisition (9)
Data-independent acquisition (8)
SWATH MS (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Illumina HiSeq 2000 (4)
Illumina HiSeq 2500, ILLUMINA (3)
Affinity proteomics (3)
Gel-based experiment (3)
SRM/MRM (3)
Top-down proteomics (3)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
Olink affinity proteomics (2)
HiSeq X Ten, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 1000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (1)
NextSeq 550, ILLUMINA (1)
All-ion fragmentation (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2000 (26)
NextSeq 500 (11)
Illumina NovaSeq 6000 (7)
NextSeq 550 (6)
Illumina Genome Analyzer II (3)
Illumina MiSeq (3)
NextSeq 2000 (2)
DNBSEQ-T7 (2)
MinION (2)
Illumina HiSeq 4000 (2)
DNBSEQ-G50 (1)
Chromium Controller (1)
Affymetrix GeneTitan system (1)
Affymetrix GeneChip HT MG-430 PM (1)
Illumina Genome analyzer IIx (1)
Qiagen MinElute (1)
Illumina BeadArray Reader (1)
Unspecified (1)
Agilent scanner (1)
Tecan HS400Pro (1)
Table centrifuge (1)
Illumina Hiseq 2000 (1)
428 [Affymetrix] (1)
Illumina Genome Analyzer IIx (1)
Chemostat (1)
ScanArray 4000XL [PerkinElmer] (1)
None (1)
TruSeq (Illumina, Novogene, Genomic Centre Cambridge, CB4 0FW, UK.) (1)
NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer (1)
Histopaque-1077,FACSAria Fusion Sorter,Flow Cytometer (1)

Publication Date

2024 (105)
2026 (104)
2022 (101)
2025 (95)
2012 (85)
2021 (83)
2010 (81)
2014 (80)
2015 (77)
2016 (70)
2020 (69)
2023 (68)
2013 (68)
2011 (61)
2017 (56)
2019 (55)
2018 (51)
2009 (39)
2008 (36)
2007 (36)
2005 (16)
2006 (10)
2004 (2)
2003 (2)

UNIPROT ID/AC

5691.AAQ15626 (2)
5691.AAQ15709 (2)
5691.AAQ16021 (2)
5691.AAZ10366 (2)
5691.AAZ10412 (2)
5691.AAZ10463 (2)
5691.AAZ10464 (2)
5691.AAZ10465 (2)
5691.AAZ10466 (2)
5691.AAZ10510 (2)
5691.AAZ10511 (2)
5691.AAZ10512 (2)
5691.AAZ10771 (2)
5691.AAZ10942 (2)
5691.AAZ10991 (2)
5691.AAZ11075 (2)
5691.AAZ11276 (2)
5691.AAZ11337 (2)
5691.AAZ11338 (2)
5691.AAZ11340 (2)
5691.AAZ11529 (2)
5691.AAZ11530 (2)
5691.AAZ11531 (2)
5691.AAZ11532 (2)
5691.AAZ11533 (2)
5691.AAZ11534 (2)
5691.AAZ11535 (2)
5691.AAZ11536 (2)
5691.AAZ11537 (2)
5691.AAZ11660 (2)

CHEBI ID

CHEBI:16708 (12)
CHEBI:15891 (11)
CHEBI:17368 (11)
CHEBI:17568 (11)
CHEBI:7916 (11)
CHEBI:16335 (10)
CHEBI:16919 (10)
CHEBI:17203 (10)
CHEBI:17596 (10)
CHEBI:16015 (9)
CHEBI:16027 (9)
CHEBI:16235 (9)
CHEBI:16750 (9)
CHEBI:17154 (9)
CHEBI:17821 (9)
CHEBI:15354 (8)
CHEBI:15428 (8)
CHEBI:15603 (8)
CHEBI:15676 (8)
CHEBI:15729 (8)
CHEBI:16450 (8)
CHEBI:16704 (8)
CHEBI:16737 (8)
CHEBI:16828 (8)
CHEBI:16870 (8)
CHEBI:17015 (8)
CHEBI:17533 (8)
CHEBI:17724 (8)
CHEBI:17895 (8)
CHEBI:18012 (8)

Metabolite Name

Taurine (11)
Xanthine (11)
Adenine (10)
Uracil (10)
Allantoin (9)
L-Tyrosine (9)
Thymine (9)
Adenosine (8)
Choline (8)
Creatine (8)
Guanine (8)
L-Leucine (8)
L-Proline (8)
L-Tryptophan (8)
N-Acetyl-L-methionine (8)
N-Acetylputrescine (8)
Riboflavin (8)
Thymidine (8)
Creatinine (7)
Guanosine (7)
Hypoxanthine (7)
L-Alanine (7)
L-Carnitine (7)
L-Glutamate (7)
L-Glutamine (7)
L-Serine (7)
L-Threonine (7)
Nicotinamide (7)
Pimelic acid (7)
Uridine (7)

First Public Date

2014 (184)
2024 (158)
2025 (111)
2026 (99)
2023 (84)
2022 (83)
2020 (78)
2021 (72)
2019 (65)
2017 (55)
2018 (48)
2015 (40)
2016 (29)
2013 (27)
2012 (5)

Classification

bacteria (34)
viruses (5)
fungi (2)

Modification

4x(2)H labeled dimethylated L-lysine (2)
Not available (1)

Study status

Completed (12)
Recruiting (8)
Active, not recruiting (2)
Not provided (2)
Terminated (2)
Not yet recruiting (1)
Ongoing (1)

Study type

Transcription profiling by array (268)
RNA-seq of coding RNA (67)
Comparative genomic hybridization by array (35)
Methylation profiling by array (22)
Interventional (20)
Unknown experiment type (14)
Cell line - High-throughput sequencing (12)
RNA-seq of non coding RNA (12)
Other (7)
ChIP-seq (7)
DNA-seq (6)
ChIP-chip by tiling array (4)
Genotyping by array (4)
RIP-seq (4)
Proteomic profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Cell line - Two-color microarray (2)
Animal - One-color microarray (2)
High-throughput sequencing (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
RNAi profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
Animal - Two-color microarray (1)
Human - Methylation microarray (1)
Plant - One-color microarray (1)
Transcription profiling by tiling array (1)
CLIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (8031)
2022 (5920)
2024 (5609)
2023 (5486)
2021 (4822)
2020 (3402)
2019 (2446)
2018 (2041)
2017 (1725)
2016 (1394)
2015 (1179)
2026 (1162)
2014 (1068)
2013 (691)
2012 (533)
2011 (359)
2010 (295)
2009 (195)
2008 (147)
2007 (134)
2006 (79)
2005 (65)
2003 (46)
2002 (38)
2001 (37)
2004 (36)
2000 (25)
1999 (24)
1998 (20)
1997 (6)

Lab affiliation

ARC Centre of Excellence in Plant Energy Biology, M316, 35 Stirling Hwy, 6009, WA, Australia Faculty of Science, The University of Western Australia (4)
Copenhagen Center for Glycomics and Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, DK-2200 Copenhagen N, Denmark (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
Division of Surgery, Oncology, and Pathology, Department of Clinical Sciences. Biomedical Center – Lund University, Solvegatan 19, 223 62, Lund, Sweden (2)
Institute of Biochemistry II, Goethe University Frankfurt, Medical School, 60590 Frankfurt, Germany (2)
Associate Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH, Utrecht, The Netherlands and Netherlands Proteomics Center, Padualaan 8, 3584 CH, Utrecht, The Netherlands (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Biotransformation and Biocatalysis, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands (1)
Breast Cancer Clinical Research Unit Centro Nacional de Investigaciones Oncológicas – CNIO Madrid, Spain. (1)
CELL Unit & PICT Imaging Platform, de Duve Institute, UCLouvain, UCL B1.75.05, Avenue Hippocrate, 75, B-1200 Brussels, Belgium. Phone: +32-2-764.75.91; Fax: +32-2-764.75.43 (1)
CNRS UMR7242, Biotechnology and Cell Signaling, University of Strasbourg, 300 Bd Sébastien Brant, 67412 Illkirch, France (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Carnegie Mass Spectrometry Facility at Stanford (1)
Cedars-Sinai Medical Center (1)
Cedars-Sinai Medical Center, Smidt Heart Institute (1)
Centre for Genomics and Computational Biology. Barts Cancer Institute / Queen Mary University of London (1)
Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Bellaterra, Barcelona 08193, Spain (1)
Chair of Proteomics and Bioanalytics, TU Munich (1)
Chair, Dept of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Canada (1)
Charité Univeristätsmedizin Berlin, Department of Surgery, Augustenburger Platz 1, 13353 Berlin (1)
Cornell University (1)
Departamento de Fisiologia, Laboratório de Fisiologia da Nutrição, Universidde Federal de São Paulo, Brasil (1)
Department of Anesthesiology, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
Department of Biochemistry, Charité Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany Berlin Institute of Health (BIH) at Charité Universitätsmedizin Berlin, Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Roosevelt Dr, Headington, Oxford OX3 7BN, UK (1)
Department of Biological Sciences, University of Alberta (1)
Department of Biomedical Sciences, Seoul National University College of Medicine 103 Daehakro Seoul 30380, Korea (1)

Location

France (4)
Italy (4)
United States (4)
Belgium (2)
Canada (2)
Germany (2)
Norway (2)
Spain (2)
Austria (1)
China (1)
Luxembourg (1)
Netherlands (1)
New Zealand (1)
South Korea (1)
Turkey (1)
United Kingdom (1)

Keyword

Fluorouracil (3)
Irinotecan (3)
Oxaliplatin (3)
Bevacizumab (2)
Capecitabine (2)
Cetuximab (2)
Colon (2)
Exercise (2)
Immunotherapy (2)
Leucovorin (2)
Pembrolizumab (2)
Temozolomide (2)
10-068 (1)
12-221 (1)
5-Fluorouracil (1)
Avelumab (1)
BO-112 (1)
Behavior (1)
Biomarker (1)
Bisacodyl (1)
CAR T-cells (1)
Chromoscopy (1)
Colonoscopy (1)
Colorectal surgery (1)
Cytokine (1)
Economic evaluation (1)
Fast track (1)
First line (1)
First-line (1)
Flow-cytometry (1)

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A mouse model of the most aggressive subgroup of human medulloblastoma

This SuperSeries is composed of the following subset Series: GSE33199: A mouse model of the most aggressive subgroup of human medulloblastoma [Mouse430_2] GSE33200: A mouse model of the most aggressive subgroup of human medulloblastoma [HT_MG-430_PM] Refer to individual Series

ORGANISM(S): Mus musculus

2012-02-29 | E-GEOD-33201 | biostudies-arrayexpress

Oryza sativa indica subgroup

Oryza sativa indica subgroup Assembly

PRJNA1053857 | ENA

The transcriptome of TRPV1-positive sensory neurons revealed by subgroup-elimination transcriptomics

We developed an approach to rapidly eliminate the subgroup of sensory neurons expressing the heat-gated cation channel TRPV1 from dissociated rat sensory ganglia using agonist treatment followed by density centrifugation. To identify transcripts predomintly expressed in TRPV1-positive neurons, we co...

ORGANISM(S): Rattus norvegicus

2015-05-12 | E-GEOD-59727 | biostudies-arrayexpress

A mouse model of the most aggressive subgroup of human medulloblastoma [Mouse430_2]

Mouse models of medulloblastoma are compared to human subgroups through microarray expression and other measures This study contrasts mouse medullablastomas from a range of mouse genetic models. For Shh-type medulloblastoma [dka001-005, 009, 033 and 034] and [dka050-057], spontaneous medulloblastom...

ORGANISM(S): Mus musculus

2012-02-29 | E-GEOD-33199 | biostudies-arrayexpress

Oryza sativa aromatic subgroup

Oryza sativa aromatic subgroup Genome sequencing and assembly

PRJNA565479 | ENA

Oryza sativa aus subgroup

Oryza sativa aus subgroup Genome sequencing and assembly

PRJNA565483 | ENA

Small RNAs from four Drosophila melanogaster-subgroup species

Curration of small RNAs from four melanogaster-subgroup species (Drosophila simulans, Drosophila sechellia, Drosophila erecta, and Drosophila yakuba) for the purpose of non-coding RNA annotation and comparative genomics assessment. Non-replicated small RNA samples from four melanogaster-subgroup spe...

ORGANISM(S): Drosophila simulans

2014-07-22 | E-GEOD-56244 | biostudies-arrayexpress

Small RNAs from four Drosophila melanogaster-subgroup species

PRJNA242736 | ENA

Oryza sativa tropical japonica subgroup

Oryza sativa tropical japonica subgroup Genome sequencing and assembly

PRJNA564615 | ENA

Oryza sativa tropical japonica subgroup

Oryza sativa tropical japonica subgroup Genome sequencing and assembly

PRJNA565484 | ENA