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Unknown
(2309)
Genomics
(1961)
Proteomics
(21)
Transcriptomics
(17)
Metabolomics
(11)
Models
(2)
Genomic
(1)
Organisms
Acinetobacter baylyi ADP1
(17)
Schizophyllum commune H4-8
(17)
Mycobacterium tuberculosis SP7
(17)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
(17)
Oryza sativa Japonica Group
(17)
Rabbit calicivirus
(17)
Crotalus durissus terrificus
(17)
Eriocheir sinensis
(17)
Candidatus Endoriftia persephonae
(17)
Mycobacterium tuberculosis SP10
(17)
Mycobacterium tuberculosis SP13
(17)
Cotesia typhae
(17)
Mycobacterium tuberculosis SP22
(17)
Cepaea nemoralis
(17)
Geobacillus kaustophilus HTA426
(17)
Enterobacter ludwigii
(17)
Trichoderma asperellum CBS 433.97
(17)
Geobacter sulfurreducens
(4)
Geotalea uraniireducens Rf4
(2)
Actinomycetota
(2)
Pseudomonas aeruginosa
(1)
Geotalea uraniireducens
(1)
Nitratidesulfovibrio vulgaris str. Hildenborough
(1)
Serratia liquefaciens
(1)
Methanococcus maripaludis
(1)
Archaea
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Eukaryota
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Viruses
(1)
Bacteria
(1)
synthetic construct
(1)
Organisms
groundwater metagenome
(450)
subsurface metagenome
(282)
soil metagenome
(161)
aquifer metagenome
(64)
sediment metagenome
(51)
marine sediment metagenome
(39)
marine metagenome
(21)
Halanaerobium congolense
(19)
bacterium
(10)
aquatic metagenome
(10)
hydrothermal vent metagenome
(10)
freshwater sediment metagenome
(8)
Halanaerobium saccharolyticum
(6)
hot springs metagenome
(6)
Deltaproteobacteria bacterium
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Clostridiales bacterium
(4)
Nitrososphaerota archaeon
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wetland metagenome
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rock metagenome
(4)
wastewater metagenome
(4)
biofilm metagenome
(4)
hydrocarbon metagenome
(3)
mine drainage metagenome
(3)
Desulfuromonadaceae bacterium
(2)
Natrinema hispanicum
(2)
Halarsenatibacter silvermanii
(2)
Pseudomonadota bacterium
(2)
Onishia taeanensis
(2)
Marinobacter persicus
(2)
Orenia metallireducens
(2)
Repository
ENA
(1921)
NODE
(42)
pride
(17)
biostudies-arrayexpress
(9)
MetaboLights
(9)
geo
(6)
MassIVE
(4)
BioModels
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GNPS
(2)
dbGaP
(1)
Tissue
Cell suspension culture
(2)
Whole body
(1)
Photosynthetic cell
(1)
Technology Type
Mass Spectrometry
(17)
Shotgun proteomics
(10)
Mass spectrometry
(8)
Bottom-up proteomics
(4)
SWATH MS
(2)
Data-dependent acquisition
(2)
Mass spectrometry assay
(1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis
(1)
Data-independent acquisition
(1)
Gel-based experiment
(1)
Instrument Platform
Q Exactive
(4)
Liquid Chromatography MS - alternating - reverse phase
(4)
Liquid Chromatography MS - positive - reverse phase
(2)
Liquid Chromatography MS - positive - hilic
(2)
LTQ Orbitrap
(1)
Direct infusion MS - negative
(1)
Liquid Chromatography MS -
(1)
MS Imaging -
(1)
Gas Chromatography MS -
(1)
Gas Chromatography MS - positive
(1)
Liquid Chromatography MS - alternating - hilic
(1)
Liquid Chromatography MS - negative - reverse phase
(1)
Publication Date
2024
(9)
2022
(6)
2010
(4)
2018
(4)
2025
(4)
2023
(4)
2015
(3)
2012
(2)
2008
(2)
2005
(2)
2026
(2)
2020
(2)
2007
(1)
2016
(1)
2013
(1)
2021
(1)
CHEBI ID
CHEBI:28825
(3)
CHEBI:17295
(3)
CHEBI:18123
(3)
CHEBI:35280
(3)
CHEBI:69061
(2)
CHEBI:16457
(2)
CHEBI:72998
(2)
CHEBI:17191
(2)
CHEBI:27592
(2)
CHEBI:17895
(2)
CHEBI:16828
(2)
CHEBI:15603
(2)
CHEBI:16467
(2)
CHEBI:69187
(2)
CHEBI:16414
(2)
CHEBI:17203
(2)
CHEBI:15891
(2)
CHEBI:17750
(2)
CHEBI:17929
(2)
CHEBI:16335
(2)
CHEBI:16919
(2)
CHEBI:16708
(2)
CHEBI:16235
(2)
CHEBI:17154
(2)
CHEBI:182831
(1)
CHEBI:4712
(1)
CHEBI:80723
(1)
CHEBI:31297
(1)
CHEBI:10086
(1)
CHEBI:80541
(1)
Metabolite Name
Trigonelline
(3)
Adenine
(3)
Β-alanine betaine
(2)
N(omega),N(omega)-dimethyl-L-arginine
(2)
S,S-dimethyl-beta-propiothetin
(2)
Testosterone phenylpropionate
(2)
Homarine
(2)
Fluticasone
(2)
Biapenem
(2)
Dehydrovomifoliol
(2)
Losartan
(2)
Clindamycin
(2)
Alanine betaine
(2)
Hernandulcin
(2)
Gemfibrozil
(2)
L-tyrosine
(2)
L-proline
(2)
L-phenylalanine
(2)
L-valine
(2)
Salicyluric acid
(2)
Quetiapine
(2)
Benzaldehyde
(2)
4-Octylphenol
(2)
Vicine
(2)
Isophorone
(2)
L-arginine
(2)
10-Hydroxydecanoic acid
(2)
Sebacic acid
(2)
Caprylic acid
(2)
N-Acetylserotonin
(2)
IsPrivate
False
(2)
Model Flag
Non Kinetic
(2)
First Public Date
2018
(606)
2017
(388)
2013
(159)
2016
(98)
2019
(94)
2024
(69)
2023
(68)
2025
(67)
2020
(67)
2015
(65)
2022
(61)
2014
(61)
2026
(59)
2021
(57)
2012
(1)
2011
(1)
Classification
bacteria
(12)
viruses
(11)
Modelling Approach
Constraint-based model
(2)
Study type
Transcription profiling by array
(8)
Unknown experiment type
(1)
Release Date
2025
(238)
2022
(222)
2023
(220)
2024
(215)
2021
(196)
2020
(182)
2019
(175)
2018
(168)
2017
(143)
2016
(104)
2015
(88)
2014
(78)
2013
(43)
2026
(42)
2012
(40)
2011
(31)
2009
(22)
2010
(20)
2006
(20)
2008
(18)
2007
(14)
2004
(12)
2005
(9)
2002
(6)
2003
(4)
2000
(3)
1999
(3)
2001
(2)
Lab affiliation
Cornell University Department of Microbiology
(3)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(2)
Masaryk University, Faculty of Science, Department of Biochemistry
(1)
Extremophiles metabolism laboratory, Winogradsky Institute of Microbiology, FRC Biotechnology, RAS, Russia
(1)
Johns Hopkins University Department of Chemistry
(1)
Helmholtz Centre for Environmental Research – UFZ GmbH Department of Molecular Systems Biology Permoserstrasse 15 04316 Leipzig, Germany
(1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
(1)
Onstott Lab, Department of Geosciences, Princeton University
(1)
Associate Professor Biology, Dalhousie University
(1)
Keck MS & Proteomics Resource Yale School of Medicine
(1)
Department of Chemistry and Bioscience, Aalborg University, Denmark
(1)
Wageningen University
(1)
Institute of microbiology, University of Greifswald
(1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(1)
Tags
pathogen
(23)
pathogen:bacterium
(12)
pathogen:virus
(11)
xref:PubMed:29069476
(6)
wastewater
(4)
xref:PubMed:29040502
(3)
xref:PubMed:34788070
(2)
xref:PubMed:28453654
(2)
xref:PubMed:31942073
(2)
xref:PubMed:36848522
(2)
xref:PubMed:18843300
(1)
xref:PubMed:36257972
(1)
xref:PubMed:30101334
(1)
xref:PubMed:32869496
(1)
xref:PubMed:30600356
(1)
xref:PubMed:30201528
(1)
xref:PubMed:30118976
(1)
xref:PubMed:25893259
(1)
xref:PubMed:25099994
(1)
xref:PubMed:37642485
(1)
xref:PubMed:23163508
(1)
xref:PubMed:16391090
(1)
xref:PubMed:22232619
(1)
xref:PubMed:33588983
(1)
xref:PubMed:29806625
(1)
xref:PubMed:28690052
(1)
xref:PubMed:30843780
(1)
xref:PubMed:24215824
(1)
xref:PubMed:22933770
(1)
xref:PubMed:36779262
(1)
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subsurface metagenome
Deep subsurface Chloroflexi
PRJNA432961
|
ENA
Cite
subsurface metagenome
subsurface metagenome
PRJNA517956
|
ENA
Cite
subsurface metagenome
Deep subsurface Metagenome
PRJNA295201
|
ENA
Cite
subsurface metagenome
subsurface metagenome Metagenomic assembly
PRJNA355136
|
ENA
Cite
subsurface metagenome
Peru margin subsurface
PRJNA276830
|
ENA
Cite
subsurface metagenome
subsurface metagenome Metagenome
PRJNA337895
|
ENA
Cite
subsurface metagenome
Terrestrial subsurface of Deccan Traps Metagenome
PRJNA389253
|
ENA
Cite
subsurface metagenome
subsurface metagenome Raw sequence reads
PRJNA328411
|
ENA
Cite
subsurface metagenome
subsurface metagenome Metagenomic assembly
PRJNA308061
|
ENA
Cite
subsurface metagenome
Deep subsurface microbial communities - 450_OLKR46/470m Metagenome
PRJNA464581
|
ENA
Cite
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