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TranscriptomicsTranscription profiling of Arabdiposis plants before and after cold treatment using spike-in controls to allow measurement of absolute mRNA expression at the global level
To address the neglected possibility for global mRNA changes in microarray experiments we developed a simple method to generate external controls for Affymetrix microarrays to allow these platforms to measure absolute mRNA expression at the global level. We used publicly available data to select pro...
ORGANISM(S): Arabidopsis thaliana 
2008-10-09 | E-MEXP-1345 | biostudies-arrayexpress
ModelsFlis2015 - Plant clock gene circuit (P2011.1.2 PLM_71 ver 1)
Flis2015 - Plant clock gene circuit (P2011.1.2 PLM_71 ver 1) This model is described in the article: Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure. Flis A, Fernández AP, Zielinski T, Mengin V, Sulpice R, St...
2024-09-02 | BIOMD0000000597 | BioModels
TranscriptomicsArabidopsis light and temperature response
High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to temperature and light
ORGANISM(S): Arabidopsis thaliana 
2011-08-09 | E-MTAB-375 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of an autopolyploidy series of Arabidopsis thaliana
Heterosis occurs where F1 offspring display superior characteristics to the parents. Heterosis is usually considered to result from crosses of genetically distinct (e.g. homozygous inbred) parents producing heterozygous F1 offspring. Most mechanistic models for heterosis require genetically heterozy...
ORGANISM(S): Arabidopsis thaliana 
2014-08-01 | E-GEOD-52885 | biostudies-arrayexpress
TranscriptomicsDawn anticipation
To investigate the role of TIC in the morning perception process, we performed a transcriptome analysis of the wild type and time for coffee mutant (tic-2) at dawn. An additional file is included. In this file, the expression values for the replicates are condensed in a single data point obtaining o...
ORGANISM(S): Arabidopsis thaliana 
2013-10-10 | E-MTAB-1362 | biostudies-arrayexpress
TranscriptomicsCarbon starvation along the maize leaf gradient
gene expression profiling in different zones along the gradient of the growing maize leaf balde aover a time course of dirunal cycle and carbon starvation by extension of the night Plants assimilate carbon in their photosynthetic tissues in the light. However, carbon is required during the night, an...
ORGANISM(S): Zea mays 
2016-08-24 | E-GEOD-85963 | biostudies-arrayexpress
OtherSystems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.
PRIDE ID: 21331, ae1_5: PE47_1, PE48_1, PE5_4, PE6_4, PE7_4, PE8_4, control_25, control_26. Data published as part of Mol Syst Biol. 2012, 8:606 . From the Abstract: {{i}} ... To reveal the dynamic systems behaviour of leaf development, we profiled Arabidopsis leaf number six in depth at four diffe...
ORGANISM(S): Thale_cress 
GPM11210004321 | GPMDB
Resource Reanalysis 
ModelsP2011.3.1 Copasi
P2011.3.1 Copasi
2019-12-20 | 654 | FAIRDOMHub
ModelsP2011.6.1 Copasi
P2011.6.1 Copasi
2019-12-20 | 655 | FAIRDOMHub
ModelsArabidopsis clock model P2011.1.2 - PLM_71, version 1, SUBMITTED
Arabidopsis clock model P2011.1.2 - PLM_71, version 1, SUBMITTED
2019-12-20 | 388 | FAIRDOMHub
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