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UNIPROT ID/AC

3847.GLYMA05G03900.1 (3)
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C6SX15_SOYBN (3)
3847.GLYMA15G08715.1 (3)
K7MVC1_SOYBN (3)
K7N3H7_SOYBN (3)
3847.GLYMA01G09540.1 (3)
I1J7C7_SOYBN (3)
C6TGR3_SOYBN (3)
A0A0R0GU87_SOYBN (3)
3847.GLYMA06G14610.1 (3)
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P27550 (1)

CHEBI ID

CHEBI:30769 (16)
CHEBI:25017 (16)
CHEBI:18012 (14)
CHEBI:15741 (14)
CHEBI:16811 (14)
CHEBI:16708 (14)
CHEBI:26271 (14)
CHEBI:27897 (13)
CHEBI:32816 (13)
CHEBI:16449 (13)
CHEBI:6650 (13)
CHEBI:22660 (13)
CHEBI:22653 (13)
CHEBI:28300 (13)
CHEBI:27266 (13)
CHEBI:30915 (13)
CHEBI:18237 (13)
CHEBI:25094 (13)
CHEBI:28044 (13)
CHEBI:16335 (12)
CHEBI:15428 (12)
CHEBI:17822 (12)
CHEBI:24898 (12)
CHEBI:15891 (11)
CHEBI:26986 (11)
CHEBI:17154 (11)
CHEBI:15354 (10)
CHEBI:15351 (6)
CHEBI:30089 (1)
CHEBI:15350 (1)

Metabolite Name

Adenosine (9)
Citric acid (8)
Adenine (8)
Valine (7)
Leucine (7)
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Methionine (5)
Fumaric acid (5)
Citraconic acid (5)
Deoxycholic acid (5)
Itaconic acid (5)
Lysine (5)
Malic acid (5)
Serine (5)

First Public Date

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2018 (6)
2022 (5)
2016 (5)
2017 (4)
2019 (3)
2015 (3)
2020 (2)
2014 (2)
2013 (2)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (4)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
St.jude children's research hospital (2)
Sun yat-sen university cancer center (2)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Precision Research Center for Refractory Diseases, Shanghai General Hospital,Shanghai Jiao Tong University School of Medicine (1)
Professor of Pharmaceutical Sciences & Moulder Center for Drug Discovery Professor Lewis Katz School of Medicine Member Fox Chase Cancer Institute Director of Proteomics/Metabolomics Temple University School of Pharmacy 3307 N Broad Street Room 552 Philadelphia, PA 19140 Tel: 215 707 9228 (1)
Department of Ecogenomics and Systems Biology, Division Molecular Systems Biology, University of Vienna, Austria (1)
Proteomics Group-ProteoRed PRB3/ISCIII Instituto de Investigación Biomédica de A Coruña (INIBIC), Spain (1)
Proteomics Group-ProteoRed PRB2/ISCIII Instituto de Investigación Biomédica de A Coruña (Spain) (1)
College of Veterinary Medicine, Gansu Agricultural University (1)
Copenhagen Center for Glycomics (CCG), Glyco-MS Group Department of Cellular and Molecular Medicine University of Copenhagen (1)
Dr Peter C Dedon, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore 138602, Singapore (lab head) (1)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (1)
Head of the Department, Proteomics Core (1)
School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong, China (1)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics, Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (1)
Tianjin Medical University Eye Hospital, Tianjin Medical University Ophthalmology Research Institute，Tianjin,300384 (1)
Department of Pharmacology & Chemical Biology, University of Pittsburgh School of Medicine,UPMC Hillman Cancer Center, Pittsburgh, PA (1)
Hospital of Stomatology, Guanghua School of Stomatology, Sun Yat-sen University, Guangzhou (1)
Centre for Membrane Interactions and Dynamics, Department of Biomedical Science, University of Sheffield, Sheffield (1)
Department of Plant Bioscience, Pusan National University, 1268-50 Samrangjin-ro, Samnangjin-eup, Miryang, 50463, Korea Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea. (1)
Shenzhen eye hospital (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg, CNRS, Strasbourg, France (1)
Institute for Plant Biochemistry and Photosynthesis Department of Computer Science and Artificial Intelligence University of Seville Spain (1)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (1)
Key Lab of Aridland Crop Science, Gansu Agricultural University, Lanzhou, Gansu, P.R. China (1)
Centre for Proteomic Research, Biological Sciences, University of Southampton (1)
Department of Medicine (1)

IsPrivate

False (1)

Modification

Not available (1)

Study type

Transcription profiling by array (174)
RNA-seq of coding RNA (41)
ChIP-seq (31)
DNA-seq (31)
Comparative genomic hybridization by array (12)
ChIP-chip by tiling array (10)
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Unknown experiment type (4)
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Animal - High-throughput sequencing (2)
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RNA-seq of coding RNA from single cells (2)
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Mapping the tRNA Modification Landscape of Bartonella henselae Houston I and Bartonella quintana Toulouse

Transfer RNA (tRNA) modifications play a crucial role in maintaining translational fidelity and efficiency, and they may function as regulatory elements in stress response and virulence. Despite their pivotal roles, a comprehensive mapping of tRNA modifications and their associated synthesis genes i...

ORGANISM(S): Bartonella henselae (strain ATCC 49882 / Houston 1) (Rochalimaea henselae) Bartonella quintana str. Toulouse

2024-01-23 | PXD048805 | Pride