Sun M M - OmicsDI

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Unknown (40901)
Proteomics (1320)
Transcriptomics (725)
Genomics (385)
Metabolomics (173)
Other (9)
Models (6)
Genomic (2)
Multiomics (2)
Methylation profiling (1)

Organisms

Homo sapiens (1010)
Mus musculus (501)
Arabidopsis thaliana (80)
Rattus norvegicus (38)
Zea mays (31)
Escherichia coli (29)
Saccharomyces cerevisiae (29)
Drosophila melanogaster (27)
Oryza sativa (26)
Candida albicans (17)
Danio rerio (16)
Gallus gallus (11)
Fagus sylvatica (9)
Hordeum vulgare (7)
Vitis vinifera (7)
Oryza sativa Japonica Group (6)
Sus scrofa (6)
Macrobrachium nipponense (4)
Staphylococcus aureus subsp. aureus NCTC 8325 (3)
Macaca mulatta (3)
Yersinia pestis (3)
Macaca fascicularis (3)
Apis mellifera (3)
Schizosaccharomyces pombe (3)
Trypanosoma brucei (3)
Streptococcus pneumoniae (3)
Ovis aries (3)
Arabidopsis (2)
Scophthalmus maximus (2)
Staphylococcus aureus subsp. aureus str. Newman (2)

Organisms

Homo sapiens (29)
Mus musculus (19)
Fagus sylvatica (8)
Caenorhabditis elegans (3)
Mikania micrantha (2)
Acer japonicum (2)
Melastoma malabathricum subsp. normale (2)
Proteus mirabilis (2)
Melastoma candidum (1)
Thlaspi arvense (1)
bioanode metagenome (1)
Petroselinum crispum (1)
cold seep metagenome (1)
Mycolicibacterium smegmatis MC2 155 (1)
Mycobacterium tuberculosis variant bovis (1)
Rattus (1)
Orbicella faveolata (1)
Brassica juncea (1)
Schizosaccharomyces pombe (1)
Aedes aegypti (1)
Mycobacterium tuberculosis (1)
marine sediment metagenome (1)
Macrobrachium rosenbergii (1)
Pyricularia oryzae (1)
sponge metagenome (1)
Danaus plexippus (1)
Cucurbita pepo (1)
Arabidopsis thaliana (1)
Rattus norvegicus (1)
seawater metagenome (1)

Repository

pride (1026)
biostudies-arrayexpress (870)
iProX (226)
MetaboLights (169)
EGA (117)
ENA (111)
MassIVE (32)
PeptideAtlas (24)
geo (16)
BioModels (6)
jPOST (5)
PanoramaPublic (5)
GNPS (3)
GPMDB (3)
NODE (3)
PAXDB (3)
dbGaP (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (229)
Brain (68)
Epithelial cell (57)
Liver (50)
Leaf (43)
Blood plasma (36)
Whole body (32)
Permanent cell line cell (29)
Plant cell (29)
Lung (27)
Testis (26)
Heart (23)
Hepatocyte (19)
Blood serum (18)
Colon (18)
Root (15)
Skin (15)
Blood cell (14)
Kidney (14)
B cell (13)
Embryo (13)
Fibroblast (13)
Blood (12)
Macrophage (12)
Spleen (12)
Bone marrow (11)
Stem cell (11)
Sperm (10)
Heart (1)
Brain (1)

Disease

Disease free (26)
Colon cancer (23)
Breast cancer (18)
Acute leukemia (12)
Alzheimer's disease (9)
Cardiovascular system disease (9)
Lymphoma (9)
Prostate adenocarcinoma (9)
Brain cancer (8)
Hepatocellular carcinoma (8)
Kidney cancer (6)
Pancreatic cancer (5)
Brain glioblastoma multiforme (5)
Severe acute respiratory syndrome (5)
Type 2 diabetes mellitus (5)
Liver cancer (4)
Parkinson's disease (4)
Not Available (3)
Cervix carcinoma (3)
Esophageal cancer (3)
Lung cancer (3)
Male infertility (3)
Malignant neoplasm of ovary (3)
Melanoma (3)
Normal (2)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Oligodendroglioma (1)
Early-onset idiopathic chronic pancreatitis (1)
Diabetes (1)
Heart disease (1)

Technology Type

Mass Spectrometry (1027)
Shotgun proteomics (503)
Bottom-up proteomics (180)
Mass spectrometry (125)
Data-dependent acquisition (96)
Affinity purification coupled with mass spectrometry proteomics (93)
Top-down proteomics (67)
Gel-based experiment (60)
Data-independent acquisition (46)
Mass spectrometry assay (41)
SWATH MS (33)
Chemical cross-linking coupled with mass spectrometry proteomics (16)
Illumina HiSeq 2000 (10)
All-ion fragmentation (10)
Proteogenomics (10)
MSE (9)
HDMSE (7)
SRM/MRM (7)
Mass spectrometry imaging (6)
NMR spectroscopy (5)
Immunopeptidomics (5)
Illumina MiSeq (2)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Life Tech - Solid (1)
ESI (1)

Instrument Platform

DNBSEQ-T7 (30)
BGISEQ-500 (16)
Illumina NovaSeq 6000 (15)
LTQ Orbitrap Velos (15)
NextSeq 500 (14)
Illumina HiSeq 2000 (12)
Q Exactive (8)
Illumina HiSeq 2500 (5)
Illumina NovaSeq X (4)
Orbitrap Fusion Lumos (4)
LTQ Orbitrap (4)
GenePix Professional 4200A [Axon Instruments] (3)
Illumina HiSeq 4000 (3)
Q Exactive HF (3)
Instrument (3)
LTQ Orbitrap Elite (3)
Orbitrap Fusion (3)
Complete Genomics (2)
Illumina Genome Analyzer IIx (2)
418 [Affymetrix] (2)
Q-Exactive HF (2)
TripleTOF 6600 (2)
MA900, Sony (1)
10x Chromium Controller (1)
DNA Microarray Scanner (Model G2505C, Agilent Technologies) (1)
Affymetrix Primeview Human Gene Expression Array (1)
ScanArray 4000XL [PerkinElmer] (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
MinION (1)

Publication Date

2025 (247)
2023 (244)
2026 (213)
2022 (213)
2024 (207)
2013 (154)
2014 (151)
2021 (148)
2015 (106)
2020 (96)
2011 (96)
2010 (89)
2019 (80)
2016 (77)
2012 (75)
2018 (52)
2017 (41)
2009 (40)
2008 (25)
2007 (15)
2006 (6)
2005 (4)
2004 (3)

UNIPROT ID/AC

Q940U6 (2)
Q9XFM0 (2)
P03023 (1)
P03034 (1)
P04483 (1)
P49677 (1)
Q570C0 (1)
Q9LPW7 (1)
Q9LW29 (1)
Q9ZR12 (1)
10090.ENSMUSP00000005406 (1)
10090.ENSMUSP00000016144 (1)
10090.ENSMUSP00000032399 (1)
10090.ENSMUSP00000043341 (1)
10090.ENSMUSP00000048857 (1)
10090.ENSMUSP00000050156 (1)
10090.ENSMUSP00000061247 (1)
10090.ENSMUSP00000062660 (1)
10090.ENSMUSP00000071496 (1)
10090.ENSMUSP00000071652 (1)
10090.ENSMUSP00000071658 (1)
10090.ENSMUSP00000071763 (1)
10090.ENSMUSP00000072030 (1)
10090.ENSMUSP00000072521 (1)
10090.ENSMUSP00000072775 (1)
10090.ENSMUSP00000073754 (1)
10090.ENSMUSP00000076447 (1)
10090.ENSMUSP00000076538 (1)
10090.ENSMUSP00000078239 (1)
10090.ENSMUSP00000078339 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:30769 (50)
CHEBI:16335 (43)
CHEBI:15741 (42)
CHEBI:16708 (42)
CHEBI:18012 (42)
CHEBI:16704 (41)
CHEBI:17368 (40)
CHEBI:27897 (40)
CHEBI:30915 (40)
CHEBI:16750 (38)
CHEBI:17596 (38)
CHEBI:15756 (37)
CHEBI:17154 (35)
CHEBI:17568 (35)
CHEBI:28044 (33)
CHEBI:28300 (33)
CHEBI:7916 (33)
CHEBI:15428 (32)
CHEBI:16196 (32)
CHEBI:17895 (32)
CHEBI:25094 (32)
CHEBI:16027 (31)
CHEBI:16235 (31)
CHEBI:16865 (31)
CHEBI:17562 (31)
CHEBI:27266 (31)
CHEBI:16449 (30)
CHEBI:16828 (30)
CHEBI:17295 (30)
CHEBI:33699 (1)

Metabolite Name

Adenine (36)
Hypoxanthine (35)
Adenosine (34)
Inosine (33)
Uridine (33)
L-Tyrosine (32)
Citric acid (31)
Azelaic acid (30)
Guanosine (30)
Taurine (30)
Guanine (29)
L-Tryptophan (29)
Palmitic acid (29)
L-Phenylalanine (28)
Thymidine (28)
Uracil (27)
Xanthine (27)
Succinic acid (26)
Creatine (25)
Cytidine (25)
Myristic acid (25)
Oleic acid (25)
Xanthosine (24)
L-Histidine (23)
Riboflavin (22)
Uric acid (22)
Benzoic acid (21)
Creatinine (21)
Linoleic acid (21)
Thymine (21)

First Public Date

2020 (17)
2025 (16)
2014 (12)
2026 (11)
2021 (11)
2024 (10)
2022 (7)
2018 (7)
2017 (7)
2023 (6)
2016 (3)
2019 (2)
2015 (2)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (3)

Lab affiliation

Michigan State University (13)
Sun Yat-sen University (11)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (8)
Department of Chemistry, Michigan State University (7)
The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (7)
Northwest University (6)
School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (5)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (4)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Institute for Systems Biology, Seattle, WA, USA (4)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (4)
Plant Biology (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
University of Texas Medical Branch (4)
Zhejiang University (4)
BGI Research (3)
China Agricultural University (3)
College of Life Sciences, Shandong Normal University (3)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (3)
Huazhong Agricultural University (3)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Memorial Sloan Kettering Cancer Center (3)
Ocean University of China (3)
SUN YAT-SEN UNIVERSITY (3)
School of Integrative Plant Science Plant Biology Section, Cornell University (3)
St. Jude Children's Research Hospital (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (3)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)

Classification

bacteria (4)

Modification

Not available (4)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
6-dioxaoctanediamine derivatized cysteine (1)
6x(2)H labeled dimethylated L-arginine (1)
N6 (1)

Study type

Transcription profiling by array (405)
RNA-seq of coding RNA (145)
ChIP-seq (87)
DNA-seq (38)
Methylation profiling by array (32)
Comparative genomic hybridization by array (29)
Methylation profiling by high throughput sequencing (26)
RNA-seq of non coding RNA (25)
Other (17)
RNA-seq of coding RNA from single cells (16)
ChIP-chip by tiling array (12)
Unknown experiment type (9)
Genotyping by array (5)
Transcription profiling by SAGE (3)
ChIP-chip by array (3)
High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
Single nucleus RNA sequencing (2)
RNA-seq of total RNA (2)
MNase-seq (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)

Release Date

2025 (6159)
2022 (5574)
2023 (5219)
2024 (4929)
2021 (4376)
2020 (3122)
2019 (2281)
2018 (1868)
2017 (1595)
2016 (1337)
2015 (1147)
2014 (944)
2026 (887)
2013 (626)
2012 (453)
2011 (393)
2010 (284)
2009 (212)
2008 (132)
2007 (68)
2006 (41)
2005 (36)
2004 (23)
2003 (15)
2001 (14)
2002 (12)
1999 (9)
2000 (6)
1998 (6)
1997 (3)

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M3-Driven Hexosamine Biosynthesis Facilitates Hepatocellular Carcinoma Progression through YBX1 O-GlcNAcylation

Phosphoglucomutase 3 (PGM3) is one of the rate-limiting enzymes in the hexosamine biosynthesis pathway (HBP) and a key regulator of HBP metabolic flux. Despite the functional role of PGM3 has been validated in various tumors, its function and molecular mechanism in hepatocellular carcinoma (HCC) rem...

2026-09-04 | MTBLS15552 | MetaboLights

Aedes aegypti strain:M-1 | isolate:M-1

Aedes aegypti strain:M-1 | isolate:M-1 Metagenome

PRJNA773859 | ENA

Sun and shade leaves_2x ambient ozone_020806

Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses...