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GenomicsPseudonocardia sp. P-1
Pseudonocardia sp. P-1 Genome sequencing
PRJNA1430108 | ENA
TranscriptomicsIntegration of tomato reproductive developmental landmarks and expression profiles, and the effect of SUN on fruit shape
Universally accepted landmark stages are necessary to highlight key events in tomato reproductive development. In this study, we provide a description of floral and fruit development in a red-fruited closely related wild relative of tomato, Solanum pimpinellifolium accession LA1589. We use establis...
ORGANISM(S): Solanum pimpinellifolium 
2010-05-18 | E-GEOD-15453 | biostudies-arrayexpress
TranscriptomicsPtr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa
Laccases were proposed to catalyze the oxidative polymerization of monolignols. We identified 49 laccase gene models in Populus trichocarpa, of which 29 were predicted to be targets of ptr-miR397a. We overexpressed Ptr-MIR397a in transgenic P. trichocarpa. In each of all 9 transgenic lines tested, 1...
ORGANISM(S): Populus trichocarpa 
2014-01-17 | E-GEOD-54153 | biostudies-arrayexpress
TranscriptomicsSun and shade leaves_2x ambient ozone_020806
Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses...
ORGANISM(S): Fagus sylvatica 
2011-10-20 | E-GEOD-17416 | biostudies-arrayexpress
TranscriptomicsEpigenome analysis of human epidermal and dermal samples with aging and sun exposure
Genome wide DNA methylation profiling of epidermal and dermal samples obtained from sun-exposed and sun-protected body sites from younger (<35 years old) and older (>60 years old) individuals. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles acro...
ORGANISM(S): Homo sapiens 
2015-03-23 | E-GEOD-51954 | biostudies-arrayexpress
TranscriptomicsSun and shade leaves_2x ambient ozone_210605
Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses...
ORGANISM(S): Fagus sylvatica 
2011-10-20 | E-GEOD-17413 | biostudies-arrayexpress
TranscriptomicsSun and shade leaves_2x ambient ozone_050805
Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses...
ORGANISM(S): Fagus sylvatica 
2011-10-20 | E-GEOD-17411 | biostudies-arrayexpress
TranscriptomicsSun and shade leaves_2x ambient ozone_190905
Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses...
ORGANISM(S): Fagus sylvatica 
2011-10-20 | E-GEOD-17415 | biostudies-arrayexpress
TranscriptomicsSun and shade leaves_2x ambient ozone_120505
Tropospheric ozone causes severe oxidative stress in plants. To investigate the transcriptional responsiveness of adult trees to ozone, fully-expanded sun and shade leaves of mature beech trees were harvested at four time points over the entire vegetation period in 2005 and 2006. Microarray analyses...
ORGANISM(S): Fagus sylvatica 
2011-10-20 | E-GEOD-17414 | biostudies-arrayexpress
ProteomicsProteomics of P granules Z granules and Mutator foci in C.elegans
To examine the protein composition of germ granules subcompartments of C. elegans, while ensuring their physiological integrity, we utilized TurboID-based proximity biotin labeling techniques to idedtify the protein components of P granules, Z granules and Mutator foci in the germline of C.elegans.
ORGANISM(S): Caenorhabditis elegans 
2024-07-14 | PXD046498 | Pride
P granules z granules  mutator foci  proteomics c.elegans 
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