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Genomics
(3106)
Unknown
(2110)
Transcriptomics
(2092)
Proteomics
(923)
Metabolomics
(86)
Methylation profiling
(56)
Other
(38)
Models
(1)
Genomic
(1)
Clinical
(1)
Organisms
Sus scrofa
(2294)
Homo sapiens
(146)
Sus scrofa domesticus
(136)
Mus musculus
(110)
Bos taurus
(66)
Rattus norvegicus
(43)
Oryctolagus cuniculus
(25)
Macaca mulatta
(24)
Macaca fascicularis
(12)
Spodoptera frugiperda
(12)
Mesocricetus auratus
(8)
Staphylococcus aureus
(7)
Cavia porcellus
(7)
Actinobacillus pleuropneumoniae
(6)
Macaca nemestrina
(6)
Drosophila melanogaster
(5)
Streptococcus suis
(4)
Sus scrofa scrofa
(3)
Actinobacillus pleuropneumoniae serovar 1 str. 4074
(2)
Bordetella bronchiseptica
(2)
Saccharomyces cerevisiae
(2)
Steinernema carpocapsae
(1)
Streptococcus suis P1/7
(1)
Ascaris suum
(1)
Streptococcus suis 05ZYH33
(1)
Bacteroides thetaiotaomicron
(1)
Escherichia coli O157:H7
(1)
Ornithodoros moubata
(1)
Anopheles arabiensis
(1)
Chlorocebus aethiops
(1)
Organisms
Sus scrofa
(2352)
Sus scrofa domesticus
(158)
Sus scrofa scrofa
(62)
pig gut metagenome
(13)
Mus musculus
(8)
Sus
(7)
Sus sp.
(7)
feces metagenome
(5)
Brucella suis bv. 2
(4)
Homo sapiens
(4)
pig metagenome
(2)
Callithrix jacchus
(2)
Apostichopus japonicus
(2)
gut metagenome
(2)
Zea mays
(2)
Canis lupus familiaris
(2)
Solanum tuberosum
(2)
Oesophagostomum dentatum
(1)
Aerococcus urinae
(1)
Corynebacterium silvaticum
(1)
Cervus elaphus elaphus
(1)
Leptospira fainei serovar Hurstbridge str. BUT 6
(1)
Sus scrofa affinis
(1)
sea cucumber metagenome
(1)
Campylobacter hyointestinalis subsp. hyointestinalis
(1)
Sus scrofa leucomystax
(1)
Lactiplantibacillus plantarum subsp. plantarum
(1)
Mycobacterium avium subsp. paratuberculosis
(1)
Spodoptera frugiperda
(1)
Parabacteroides distasonis
(1)
Repository
ENA
(2827)
geo
(1779)
biostudies-arrayexpress
(667)
pride
(427)
PeptideAtlas
(320)
iProX
(79)
MetaboLights
(71)
MassIVE
(56)
EVA
(33)
jPOST
(9)
MetabolomicsWorkbench
(9)
GNPS
(6)
PAXDB
(6)
EGA
(4)
PanoramaPublic
(4)
ExpressionAtlas
(3)
BioModels
(1)
dbGaP
(1)
GPMDB
(1)
Tissue
Spleen
(8)
Colon
(6)
Blood
(4)
Jejunum
(2)
Alveolus of lung
(1)
Corpus callosum
(1)
Mesenteric lymph node
(1)
Brainstem
(1)
Hippocampal formation
(1)
Occipital cortex
(1)
Tonsil
(1)
Omentum
(1)
Caecum
(1)
Penis
(1)
Duodenum
(1)
Epididymis
(1)
Medulla oblongata
(1)
Pons
(1)
Stomach
(1)
Frontal cortex
(1)
Cortex of kidney
(1)
Pituitary gland
(1)
Uterus
(1)
Skeletal muscle tissue
(1)
Ileum
(1)
Heart left ventricle
(1)
Dorsal plus ventral thalamus
(1)
Cerebellum
(1)
Amygdala
(1)
Vaginal epithelium
(1)
Disease
Disease free
(11)
Cardiovascular system disease
(7)
Wounds and Injuries
(7)
Duchenne muscular dystrophy
(6)
Myocardial ischemia
(5)
Breast cancer
(4)
Sepsis
(3)
Colon cancer
(3)
Influenza
(3)
Lung adenocarcinoma
(3)
Male infertility
(3)
Permanent neonatal diabetes mellitus
(3)
Diabetes mellitus
(2)
Infertility
(2)
Laron syndrome
(2)
Swine influenza
(2)
Pseudorabies virus infected
(1)
Cutaneous melanoma
(1)
SS2-infected
(1)
None
(1)
Control
(1)
Normal
(1)
The project is in the primary prevention, a study of diseases / health problems does not take place
(1)
Not Available
(1)
Alzheimer's disease
(1)
Anemia
(1)
Atherosclerosis
(1)
Atrial fibrillation
(1)
Bacterial sepsis
(1)
Charcot-Marie-Tooth disease
(1)
Technology Type
Mass Spectrometry
(435)
Shotgun proteomics
(231)
Bottom-up proteomics
(74)
Data-dependent acquisition
(55)
Mass spectrometry
(50)
Gel-based experiment
(29)
Data-independent acquisition
(25)
Affinity purification coupled with mass spectrometry proteomics
(23)
Top-down proteomics
(19)
Mass spectrometry assay
(16)
SWATH MS
(15)
Chemical cross-linking coupled with mass spectrometry proteomics
(13)
ESI
(6)
HDMSE
(6)
SRM/MRM
(6)
MSE
(5)
NMR spectroscopy
(4)
All-ion fragmentation
(4)
Mass spectrometry imaging
(4)
EI
(2)
Metaproteomics
(2)
Proteogenomics
(2)
NMR spectroscopy assay
(1)
NMR
(1)
DiaPASEF
(1)
Instrument Platform
Illumina HiSeq 2500
(28)
Illumina NovaSeq 6000
(22)
Illumina HiSeq 2000
(17)
Illumina HiSeq 4000
(11)
NextSeq 2000
(4)
NextSeq 500
(4)
Illumina Genome Analyzer II
(3)
Illumina HiScanSQ
(3)
Ion Torrent S5 XL
(2)
NextSeq 550
(2)
10x Genomics Chromium Controller, PCR thermocycler, Agilent 2100 Bioanalyzer with High Sensitivity DNA chip (for quality control)
(1)
Water bath (for enzymatic dissociation), cell strainer (70-μm), benchtop centrifuge, automated cell counter/hemocytometer, biological safety cabinet
(1)
Sterile surgical instrument set (scalpels, tissue forceps, dissection scissors), animal operating table, biological safety cabinet
(1)
Macbook Pro 2018
(1)
BRB-seq tool and pipeline
(1)
NucleoSpin RNA kit (Macherey-Nagel)
(1)
Gilson Minipuls 3
(1)
Nanodrop 2000c spectrophotometer
(1)
NEB
(1)
UC
(1)
Lightwave
(1)
Truseq RNA v2
(1)
None
(1)
Affymetrix GeneChip Scanner 3000 7G
(1)
Illumina Genome Analyzer IIx
(1)
Axon- GenePix4000B
(1)
ScanArray Express HT [PerkinElmer]
(1)
GenePix 4000B [Axon Instruments]
(1)
Illumina NovaSeq X
(1)
Ion Torrent PGM
(1)
Publication Date
2025
(270)
2023
(250)
2022
(226)
2021
(217)
2024
(200)
2026
(191)
2020
(189)
2013
(158)
2016
(151)
2014
(149)
2015
(147)
2012
(147)
2019
(140)
2018
(130)
2010
(120)
2017
(117)
2011
(105)
2009
(78)
2008
(54)
2007
(27)
2006
(10)
2005
(7)
2004
(6)
2003
(3)
UNIPROT ID/AC
1433E_SHEEP
(6)
1433Z_SHEEP
(6)
6PGD_SHEEP
(6)
A1AT_SHEEP
(6)
A8DR93_SHEEP
(6)
AL1A1_SHEEP
(6)
ALBU_SHEEP
(6)
ANT3_SHEEP
(6)
ANXA2_SHEEP
(6)
CERU_SHEEP
(6)
COF1_SHEEP
(6)
FETUA_SHEEP
(6)
G3P_SHEEP
(6)
HBB_SHEEP
(6)
IDHC_SHEEP
(6)
PDXK_SHEEP
(6)
PLMN_SHEEP
(6)
SODC_SHEEP
(6)
THIO_SHEEP
(6)
TTHY_SHEEP
(6)
W5NPN4_SHEEP
(6)
W5NQ45_SHEEP
(6)
W5NUE3_SHEEP
(6)
W5NUN8_SHEEP
(6)
W5NUX8_SHEEP
(6)
W5NVC9_SHEEP
(6)
W5NXN2_SHEEP
(6)
W5NY95_SHEEP
(6)
W5NYA7_SHEEP
(6)
W5P1X9_SHEEP
(6)
ENSEMBL ID
ENSSSCG00000030893
(4)
CHEBI ID
CHEBI:15891
(13)
CHEBI:16919
(12)
CHEBI:17368
(12)
CHEBI:16335
(10)
CHEBI:17750
(10)
CHEBI:16704
(10)
CHEBI:17596
(10)
CHEBI:17154
(9)
CHEBI:15428
(9)
CHEBI:16040
(9)
CHEBI:18257
(9)
CHEBI:17562
(9)
CHEBI:16235
(9)
CHEBI:16708
(9)
CHEBI:16015
(9)
CHEBI:16737
(9)
CHEBI:16742
(8)
CHEBI:36274
(8)
CHEBI:17754
(8)
CHEBI:17203
(8)
CHEBI:15611
(8)
CHEBI:15727
(8)
CHEBI:16359
(8)
CHEBI:71466
(8)
CHEBI:7916
(8)
CHEBI:30915
(8)
CHEBI:16027
(8)
CHEBI:17568
(8)
CHEBI:17509
(8)
CHEBI:15741
(8)
Metabolite Name
Hypoxanthine
(14)
Betaine
(12)
Taurine
(12)
Creatine
(12)
Creatinine
(11)
Cytosine
(10)
Glycerophosphocholine
(10)
Carnosine
(9)
L-Proline
(9)
L-Arginine
(9)
Cholic acid
(9)
Pipecolic acid
(9)
Propionylcarnitine
(8)
Niacinamide
(8)
L-Threonine
(8)
Choline
(8)
Tauroursodeoxycholic acid
(8)
Deoxycholic acid
(8)
Oleamide
(8)
Sphinganine
(8)
Guanine
(8)
L-Glutamine
(8)
Guanosine
(8)
L-Carnitine
(8)
Chavicol
(7)
PC(16:0/16:0)
(7)
Benzaldehyde
(7)
L-Lysine
(7)
Hydroquinone
(7)
Serotonin
(7)
First Public Date
2014
(373)
2024
(296)
2025
(289)
2023
(262)
2022
(229)
2026
(228)
2021
(204)
2020
(183)
2019
(183)
2017
(158)
2018
(145)
2016
(106)
2015
(98)
2013
(72)
2012
(1)
Modelling Approach
Ordinary differential equation model
(1)
Study status
Completed
(1)
Lab affiliation
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München
(7)
He JunJun
(5)
Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, 81377 Munich, Germany
(5)
LIST-ERIN-BEAP Bascharage1 Luxembourg
(4)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany
(3)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Spain
(3)
Institute of Diabetes and Regeneration Research, Helmholtz Munich, Neuherberg, Germany
(3)
Laboratory for Functional Genome Analysis Genzentrum Ludwig-Maximilians-Universität München Feodor-Lynen-Str. 25 D-81377 München Germany
(3)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany
(3)
Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany
(3)
Aalborg University
(2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands
(2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC)
(2)
China agricultural university, preventive veterinary medicine
(2)
College of Veterinary Medicine, Huazhong Agricultural University
(2)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China
(2)
DIVAS, University of Milan
(2)
Department of Animal Anatomy and Physiology, Faculty of Biology and Biotechnology, University of Warmia and Mazury
(2)
Department of Biotechnology, Stem cell and biomaterial engineering Lab, Yonsei University, Republic of Korea.
(2)
Department of Chemistry and Biochemistry, The University of Texas at Dallas
(2)
Department of Microbiology and Immunology, College of Veterinary Medicine, China Agricultural University, Beijing, China.
(2)
ETH Zurich, Department of Biology, Institute of Molecular Health Sciences
(2)
Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland, and Department of Cardiothoracic Surgery, Jena University Hospital, Jena, Germany
(2)
Friedrich-Loeffler-Institut
(2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
(2)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany
(2)
Internal Diseases Clinic, Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia
(2)
King's College London - Cardiovascular Division
(2)
Lanzhou Veterinary Research Institute
(2)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences
(2)
Tags
pathogen
(9)
pathogen:bacterium
(9)
xref:PubMed:33758196
(8)
xref:PubMed:38262957
(7)
xref:PubMed:24699212
(6)
xref:PubMed:32341164
(5)
xref:PubMed:33798453
(5)
xref:PubMed:34678203
(4)
xref:PubMed:28327084
(4)
xref:PubMed:35550009
(4)
xref:PubMed:28821716
(4)
xref:PubMed:34490028
(4)
xref:PubMed:36175587
(4)
xref:PubMed:37311769
(4)
xref:PubMed:29906208
(4)
xref:PubMed:31373884
(3)
xref:PubMed:42140199
(3)
xref:PubMed:41643676
(3)
xref:PubMed:34871328
(3)
xref:PubMed:27561200
(3)
xref:PubMed:29050212
(3)
xref:PubMed:36768720
(3)
xref:PubMed:31150541
(3)
xref:PubMed:37821590
(3)
xref:PubMed:22759919
(3)
xref:PubMed:40091686
(3)
xref:PubMed:35503431
(3)
xref:PubMed:22617290
(3)
xref:PubMed:25189197
(3)
xref:PubMed:33911273
(3)
IsPrivate
False
(1)
Classification
bacteria
(9)
Modification
2x(15)N labeled L-lysine
(1)
4
(1)
4x(15)N labeled L-arginine
(1)
Not available
(1)
Study type
Transcription profiling by array
(443)
RNA-seq of coding RNA
(97)
RNA-seq of non coding RNA
(24)
Comparative genomic hybridization by array
(19)
Unknown experiment type
(14)
Methylation profiling by high throughput sequencing
(9)
Transcription profiling by SAGE
(7)
RNA-seq of total RNA
(7)
RNA-seq of coding RNA from single cells
(6)
Transcription profiling by tiling array
(5)
Bisulfite-seq
(5)
ChIP-seq
(5)
Genotyping by array
(4)
MicroRNA profiling by array
(4)
Animal - High-throughput sequencing
(3)
Other
(3)
ChIP-chip by array
(2)
MicroRNA profiling by high throughput sequencing
(2)
DNA-seq
(2)
Baseline
(1)
Animal - One-color microarray
(1)
Transcription profiling by RT-PCR
(1)
ATAC-seq
(1)
Proteomic profiling by array
(1)
CUT&RUN
(1)
Observational
(1)
Release Date
2025
(311)
2022
(291)
2023
(276)
2021
(223)
2024
(207)
2020
(166)
2019
(134)
2016
(134)
2015
(129)
2014
(129)
2013
(121)
2012
(121)
2018
(110)
2017
(90)
2010
(90)
2011
(74)
2026
(48)
2009
(48)
2008
(36)
2007
(20)
2006
(6)
2005
(5)
2004
(5)
2003
(1)
2001
(1)
2000
(1)
Location
Germany
(1)
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Sus
Sus Genome sequencing and assembly
PRJNA186497
|
ENA
Cite
Sus
Sus sp. overview
PRJNA607148
|
ENA
Cite
Sus scrofa
Sus scrofa Genome sequencing
PRJNA254936
|
ENA
Cite
Sus scrofa
Sus scrofa microRNA sequencing
PRJNA276745
|
ENA
Cite
Sus scrofa
Sus scrofa Genome sequencing
PRJNA886395
|
ENA
Cite
Sus scrofa
Sus scrofa Metagenomic assembly
PRJNA980129
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA316369
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA318543
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA1006786
|
ENA
Cite
Sus scrofa
Sus scrofa Raw sequence reads
PRJNA1249214
|
ENA
Cite
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